Strain | Pseudomonas putida S12, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
TACGGCCCTTATCACTTCCCGGAAAAGCTCATCCCGCTGATGATCGTCAACGCCCTGGCCGGCAAGCCGCTGCCGGTATATGGCGACGGTCAGCAGATTC GCGACTGGTTGTACGTAAAGGACCACTGCAGCGCCATCCGCCGCGTACTGGAGGCCGGCAAAGCTGGTGAGGTGTACAACGTCGGCGGCTGGAATGAAAA GCCCAACCTGGACATCGTCAACCGCGTGTGCGCACTGCTGGACGAACTGCGCCCACGCGCCGACGGCAAGCCCTACGCCGAACAGATCACCTATGTAAGC GACCGTCCAGGTCACGACCGCCGTTATGCCATCGATGCCCGCAAGCTGGAGCAGGAGCTTGGCTGGAAGCCTGCGGAAACGTTCGAAACCGGCATCCGCA AAACCGTGGCCTGGTACCTCGACAACCAGGACTGGGTGCAGAACGTGCAGTCTGGCAGTTACCGTGACTGGGTAGAAAAAAACTACGCAGGGCGTTCTGC
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DNA Sequence for Gene |
>RPPX_RS16395
ATGAAGGTGCTGCTGCTGGGCAAGGACGGTCAGGTAGGATGGGAACTGCAACGCAGCCTGGCCCCACTGGGGCAGTTGCTGGCGCTGAACGCTCGCAGCC AGGCATACTGTGGTGACCTGGCCAACTTGCCGGGCCTGGCCGAAACCGTCCGTGTCTACGCCCCCGATGTCATCGTCAATGCGGCGGCCTACACTGCCGT GGACAAGGCCGAGAGTGACCGTGAGCAAGCCTTCAAGGTAAACGCCGACGCCGTCGGCGTGCTGGCCCGCGCTGCCGCTGAATGTGGCGCGCTACTGGTA CATTACTCCACCGACTATGTGTTCCCGGGGCAGGGCACCCAGCCTTGGCGCGAAGACGATGCCGTTGACCCATTGAATACCTATGGCGCAAGCAAGCTGG CCGGCGAGCAAGCGATCCAGGCTGCCGGTTGCCAGCACCTGATTTTCCGCACCTGCTGGGTGTATGCCGCACGCGGCAACAATTTCGCCAAAACCATGCT GCGCCTGGCTGCGGAGCGTGACAGCCTGGGCGTGATAGATGACCAGCACGGTGCCCCGACGGGTGCAGAACTGATCGCCGACATCACCGCCCACGCCATT GTCGCCACGCGCCGCAACCCATCCCTGGCTGGCCTGTACCACCTGGCCGCTGAGGGTGAAACCACCTGGTGCGGCTATGCCCGTTACGTACTGGAGCAAG CGGCAGTCCACGGCGTGCCGCTGAAAGCTCATGCCGAGAACGTCACCCCCTTGACCACAGAGGCCTACCCGACGGCGGCCATGCGGCCGGCCAACTCGCG TCTCGATACCCATAAACTGCAGAAGGCCTTTGCCCTGACCCTGCCAGACTGGCGCCTGGGTGTGGCTCGCATGCTGACGGAAATCCACGAGAAAGGACCA CTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AGCGTAAAGGCATCATTCTGGCGGGTGGGTCGGGTACCCGCCTGCACCCGGCGACCCTGGCAATTTCCAAGCAACTGTTGCCGGTGTACGACAAGCCGAT GATCTATTACCCGCTGACCACACTGATGCTGGCGGGCATTCATGACATCCTGATCATCTCCACCCCGCAAGACACCCCGCGCTTCGAGCAGCTGCTGGGC AACGGCCACCGCTGGGGCATCAACATCACCTACGCCGTGCAGCCATCTCCGGACGGCCTGGCCCAGGCGTTCCTGATTGGCGAAGACTTCCTCGGCAACG CCCCCACCGCGCTGGTGCTGGGTGACAACATCTATTACGGCCACGACTTCCAGCAGTTGCTGCGCAACGCGATGGACCGGCAAGGCAGCGCCAGTGTGTT CGCCTATCACGTGCAAGACCCCGAGCGTTATGGCGTGGTCGAGTTCGACGGGCAGGGTAATGCCATCAGCCTGGAAGAGAAACCGGCCAAACCCAAGTCC
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Amino Acid Sequence |
>dTDP-4-dehydrorhamnose reductase
MKVLLLGKDGQVGWELQRSLAPLGQLLALNARSQAYCGDLANLPGLAETVRVYAPDVIVNAAAYTAVDKAESDREQAFKVNADAVGVLARAAAECGALLV HYSTDYVFPGQGTQPWREDDAVDPLNTYGASKLAGEQAIQAAGCQHLIFRTCWVYAARGNNFAKTMLRLAAERDSLGVIDDQHGAPTGAELIADITAHAI VATRRNPSLAGLYHLAAEGETTWCGYARYVLEQAAVHGVPLKAHAENVTPLTTEAYPTAAMRPANSRLDTHKLQKAFALTLPDWRLGVARMLTEIHEKGP L
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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