Pseudomonas putida S12, RPPX_RS13600
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S12, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTGCGTGGCGTTCAGCTCGCCATTGGCCTGCAGGGTGTTGAGCATCTGGCCCTGGGGGAACTGGCGCATCTTCAGCACATACTCGATGGCTTCACCTTC GCCACCGATCTGCGGTGCGTCGACGCTACCGGTGATCGGCAACACTTGCAGGTACAGGCCTTCGGTCAGGCGTTGGTTCAGGCGCAATTCTTCGTTACAG AAATGCTGGCGCTGGTCCAGTCCGGTGAAGTCCAGGAAGCCGAAATTCATCGGTTTCTTGATCTTGTAGGCATATTCGCCAGTGAGCAGGACCCAGGAGA TATGCGTCTCGATGAGCTGAAACCCCTCCACGGGGTGAGGGTACAGGGCAGGGTTCTGCAACGCAGTAATAAGAGCTTGGCTCACGGCAAATCCTTCCGG GGCAAGGGAATTCGAATGCGCCATTATGGTCAATGGTGCCGTCCCTGCCTACCGCCGGGCCGTCTGCCCAGCCTTTATAAAGTGCGTATAATCCGCCGCC
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| DNA Sequence for Gene |
>RPPX_RS13600
ATGACCCGAACCCGAAATCCCCGCACCCCTCAGAAACGCCCGACCGGCCGCTCCCGCGCCTGGCTGGGCTGGGCTTTGAAGCTCAGCCTGGTTGGCCTGG TGATCGTTGCCGGCTTCGCGGTTTACCTCGATGCCGTCGTCCAGGAAAAGTTCTCCGGCAAGCGCTGGACCATCCCGGCCAAAGTGTATGCCCGACCGCT GGAGCTGTTCACCGGCCAGAAGTTGAGCAAGAACGACTTCCTCACCGAGCTCGATGCGCTCGGCTACCGTCGCGAAAGCGCGGCCAACGGCCCGGGCGCT GCATCCGTCAACGGCAATACCGTCGACCTCAATACCCGTGGCTTCCAGTTCTACGAGGGCATGGAACCGGCGCAGTTCGTCCGCGTGCGCTTCTCTGGCG ATTACGTTGCGGGCCTTTCCGGTGCCAACGGCAAGGCGCTTGACGTGGTGCGGCTGGAGCCGCTGATGATCGGCGGCATCTATCCGAAAAATCTCGAAGA CCGCATCCTGATCAAGATCGATCAGGTACCCAAATATCTGCTCGAAACCCTGGTGGCAACGGAGGACCGCGAGTTCTACAGCCACTTCGGCGTGTCGCCA AAGTCCATCGTCCGGGCCATGTGGGTCAACACGTCGTCCGGCTCGATGCGCCAGGGTGGCAGTACCCTGACCCAGCAATTGGTGAAGAACTTCTACCTCA GCAGCGAGCGCAGCCTCAGCCGCAAGCTGACCGAGGCGATGATGGCGGTCCTGCTCGAACTGCACTACGACAAACGCGAAATCCTTGAGGCCTACCTCAA CGAGGTGTTCGTCGGCCAGGACGGTCAACGCGCGGTGCACGGCTTTGGTCTGGCTAGCCAGTTCTTCTTCAGCCAGCCGCTGTCTGAGCTGAAACTGCAT CAGATCGCCCTGCTGGTGGGCATGGTCAAAGGCCCGTCCTACTACAACCCGCGGCGTCACCCCGAGCGGGCCCTGGCTCGCCGCAACCTGGTGCTCGACC TGGTGGCCGAACAGGGCGTGGCCAGCCAGGCAGAAGTTGATGCGGCGAAGAAAATGCCGTTGGGCGTGACAAAGCGTGGCAGCCTGGCCGACAGCTCGTT CCCGGCTTTCCTCGACCTGGTCAAGCGACAGCTGCGGCAGGACTACCGCGATGAAGACTTGACCGAAGAGGGCCTGCGTATCTTTACCAGCTTCGACCCG ATCCTGCAGATGAAGGCTGAAACCTCGATGAGCGAGACCTTCAAGCGCCTGGCGGGCCGCAAGGGGGCAGACGATGTGGAAGCGGCGATGGTCGTGACCA ACCCTGAGACCGGTGAAGTACAGGCGCTGATCGGTAGCCGCCAGGCAGGCTTCGCCGGCTTCAACCGGGCCATCGATGCTGTGCGGCCGATCGGCTCGTT GGTCAAGCCGTCGGTATACCTGACTGCGCTGGAGCAGCCGAGCAAGTACACCCTGACCAGTTGGGTGCAGGACGAGCCATTTTCGGTCAAGGGGGCTGAC GGCCAAGTCTGGCGCCCGCAAAACTATGACCGCCGCCCGCATGGCACTATCTACCTGTATCAGGGGCTGGCCAACTCCTACAACCTGTCGACCGCCAAGC TTGGCCTGGAAGTGGGTGTGCCGAACGTGATCAAGACCATTGGTCGTTTGGGCGTGAATGTCGACTGGCCTGCATTCCCTGCCATGTTGCTGGGGGCAGG TGGCATGTCGCCGATGCAGGTGGCAACCATGTACCAGACCATCGCCAACGGCGGCTTCAACACGCCGATGCGCGGCATCCGCAGCGTGCTCACCGCCGAG GGCGAGCCGCTCAAGCGCTACCCGTTCCAGATCCAGCAGACCTTCGACCCAGGTGCCATTTACCTGGTGCAGAACGCCATGCAACGCGTAATGCGAGAAG GTACAGGGCGTTCGGTGTACAACACCTTGCCGCGCTCGCTGACCCTGGCGGGCAAGACCGGTACCAGTAACGACTCGCGTGACAGCTGGTTCTCCGGCTT CAGTCAGGATCTGCTGGCCGTGGTGTGGATGGGGCGTGACGATAACGGCAAGACACCGTTTACCGGCGCCACCGGCGCCTTGCAGGTGTGGACCAGCTTC ATGAAGAAGGCCGACCCGCTGCCGCTGGATATGCCGCAACCGGACAACGTGGTGCAGGCCTGGATCGACCCCTACAGTGGCCATGGGTCTGATGCCAGCT GTCCGGGAGCGGTGCAGATGCCGTATATTCGCGGGAGTGAGCCGCCGGCCGGCGCAGCCTGTGGCGGCGAGCAGGACCCAGTAGAATCGGTAATGGACTG GGTCAAAGGCTGGATGAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACAGGCTGCATTGATGAGGTGTGATGTGAACAAGTGGCTGTTTCCTGCCGTGACGGCGTTGGCTGTGCTCCAGGGGTGCTCCAGCGTCCCGCGTGGCA ATATTCCGGTGGTCGATTCGAGCACCCGCGTGTCCAACAGCGAACGCGTGACGGCCAACCGCTCGGCGGGTGGCTATAACGCCGGCACCGCCCAGGCGCA GACGCTGCCGGAGGATTCCGGTGTCACCGTGATGATCCCGCAGGGCGCAGGCGCATCGGGCATCCAGACGTTCCCGGCGTCCAATGGCGCTGCGCCGATC AGTACCTCGCCGATCACTCCAGGGCCTGTCAGTTCGGCGCCGATGACCACCAATCCCAACCCGATTGCCGATGAACCCTTCGACATTGCAGCGATGAACA GCACCCCGCAAAGTGCCAGTGCGCCAACCGGTATTCCGCGCAGCGCCGCCGCCGGTGGCCTGTCGGCCGACGAGCAACTGGACGGTCCTGTGCTGGCACT
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| Amino Acid Sequence |
>penicillin-binding protein 1B
MTRTRNPRTPQKRPTGRSRAWLGWALKLSLVGLVIVAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFTGQKLSKNDFLTELDALGYRRESAANGPGA ASVNGNTVDLNTRGFQFYEGMEPAQFVRVRFSGDYVAGLSGANGKALDVVRLEPLMIGGIYPKNLEDRILIKIDQVPKYLLETLVATEDREFYSHFGVSP KSIVRAMWVNTSSGSMRQGGSTLTQQLVKNFYLSSERSLSRKLTEAMMAVLLELHYDKREILEAYLNEVFVGQDGQRAVHGFGLASQFFFSQPLSELKLH QIALLVGMVKGPSYYNPRRHPERALARRNLVLDLVAEQGVASQAEVDAAKKMPLGVTKRGSLADSSFPAFLDLVKRQLRQDYRDEDLTEEGLRIFTSFDP ILQMKAETSMSETFKRLAGRKGADDVEAAMVVTNPETGEVQALIGSRQAGFAGFNRAIDAVRPIGSLVKPSVYLTALEQPSKYTLTSWVQDEPFSVKGAD GQVWRPQNYDRRPHGTIYLYQGLANSYNLSTAKLGLEVGVPNVIKTIGRLGVNVDWPAFPAMLLGAGGMSPMQVATMYQTIANGGFNTPMRGIRSVLTAE GEPLKRYPFQIQQTFDPGAIYLVQNAMQRVMREGTGRSVYNTLPRSLTLAGKTGTSNDSRDSWFSGFSQDLLAVVWMGRDDNGKTPFTGATGALQVWTSF MKKADPLPLDMPQPDNVVQAWIDPYSGHGSDASCPGAVQMPYIRGSEPPAGAACGGEQDPVESVMDWVKGWMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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