Pseudomonas putida S12, RPPX_RS03195 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S12, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TATCGGCGCGCAAGATGAACATCACGTACTTGAACGACACCACCCACAGCAGCGACCACAGGATCAGCGACAGGATCCCCAGCACGCCATCATGGTTGAC CGACACCCCGTAGCCGCCGGTAAAGACCTCCTTGAGGGTATACAACGGGCTGGTGCCGATATCGCCATAAACCACCCCGACCGCCGCCACCAGCAGGCCC ACCGACCGCGACGCCCCCTGCTTCCCCTCGTGCCCGCTCTCAGCGTGACTGCTTGCCTGAACCATCGACCACTCCCGCAAACGGCCATCACGGCCCTTGG TAATCCCTCTGCCACCAGGCCCTGGAAAGTACCCCGGCGCAACGGCGCGAAGCATAGCGCAGCGTTCGTCGTATTTCTGCTGGTCAAGCGCCCTTGCGCT CGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCAAAAGCGCCCGTCAAGTTCGCCCCCGATTCCGGCCGGGCGACCTGCATTCAATACCGAGGTTAGTC
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| DNA Sequence for Gene |
>RPPX_RS03195
|rimO
ATGTCCACCACGCCCGCCACCCCCAAGGTAGGTTTCGTAAGCCTGGGTTGCCCAAAAGCCCTGGTCGACTCCGAGCGCATCCTGACCCAGCTGCGCATGG AAGGCTATGAAGTCGTACCCACCTATGAGGACGCCGACGTGGTGGTGGTCAACACCTGCGGCTTCATCGACAGCGCCAAGGCCGAATCGCTGGAAGTGAT CGGCGAAGCCATCAAGGAAAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTCGAGGAAGGCAGCATCCGTGACGTGCACCCAAGCGTGCTGTCGGTC ACTGGCCCGCAGCAGTACGAGCAGGTAGTCAACGCCGTTCACGAAGTGGTGCCGCCGCGTCAGGACCACAACCCGCTGATCGACCTGGTGCCGCCACAGG GCGTCAAGCTGACCCCGCGCCACTATGCCTACCTGAAGATCTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGGCAAGCT GGTCAGCCGCCCGGTGGGTGAAGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGTGTGAAGGAAATCCTGGTGATTTCCCAGGACACCAGCGCCTAC GGCGTCGACGTCAAGTACAAGACCGACTTCTGGAACGGCCGCCCGGTGAAGACCCGCATGCTCGAGCTGTGCGAGGCACTGAGCAGCCTGGGCGCCTGGG TCCGCCTGCACTACGTGTACCCTTACCCGAACGTTGACGACGTGATCCCGCTGATGGCTGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTTCCAGCA CGCCAGCCCGAAAGTGCTCAAGTCGATGAAGCGCCCGGCCTTCGAAGACCGCACCCTGGCGCGCATCAAGAACTGGCGCGAGCAGTGCCCTGAGCTGGTG ATCCGCTCCACCTTCATCGTCGGCTTCCCGGGCGAGACCGAGGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAAGCCCAGCTCGACCGCGTGGGCT GCTTCCAGTACTCGCCGGTGGAAGGCGCCCCGGCCAACGACCTGGGCCTGGCCGAAGTACCGGACGACGTCAAGCAAGAGCGCTGGGACCGCTTCATGGC CCACCAGCAGGCCATCAGTGCTGCCCGCCTGCAATTGCGCATCGGCAAGGAAATCGACGTGCTGATCGACGAAGTCGAGGAACAAGGTTCGGTTGGCCGC AGCTTCTTCGATGCACCGGAAATCGACGGCAGCGTGTTCATCGATGGCGACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTGGTAGATGCCG ACGAGTACGACATGTGGGCTGAACCCATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTTTTGTCAGAACGCGTGGAACAGCATCAGGACGC CCCTCGACGAGTGGTTGGCCTGCTATGTTTTCCCTATCGCCCCAGAGGAACACCGGCATGGCTGCGCTACTGACGCTACAAACTCCGCGCTTGAGCGACT ACAGCGAGATGGTACAAGTGTGGGAGGACTCGGTACGCGCCACCCACGACTTTCTGCCAGAGGGCTATATCCTGCTACTGCGCGAACATGTGCTGCGCCG GTATCTCGACGCAGTTATGCTGATCTGCTGCAAGGACCGCCAGCGCATCTGTGGCTTCGCCGGTGTCGCCAACGGGCGGGTGGACATGCTGTTCGTCGCA CCTGGCTACCGTGGCCAAGGGGTAGGCAAGCGCCTGCTGCGCTATGCCATCAGCGAACTCAATGCCGAGTACCTTGACGTCAACGAACAGAACCCGAAAG
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase RimO
MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGSIRDVHPSVLSV TGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAY GVDVKYKTDFWNGRPVKTRMLELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDRTLARIKNWREQCPELV IRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLAEVPDDVKQERWDRFMAHQQAISAARLQLRIGKEIDVLIDEVEEQGSVGR SFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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