Pseudomonas putida S12, RPPX_RS03180
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S12, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCTGAAACAGCTCACCTGCTTTGCTACACGATAATCGGCCTGAAAGCCCCGCCGTGACTGAGCTGTACATGGCCATGAAGCGCTAAGGGTTTGAACAAAA AAGGTTTTTCCAAAACAATTGCTTGACATCAGTGCGTAAATCCGTAGAATTCGATCTCACAGGCGCGGGATGGAGCAGCCTGGTAGCTCGTCGGGCTCAT AACCCGAAGGTCGTCGGTTCAAATCCGGCTCCCGCAACCATATTCGTCAGAACAAACCCCGCCTGTGTAATGCAGCGCGGGGTTTGTTGCTTTATGCCTC CCTGATTTTTGTCGCCTCGACTTTCCCTACCCTCATGCCAACCCGCAGGCTTGAGGTGTCGTGCCCAGGATGAACTATCTTTAACCCTGCCAAGCCGCTG CAAACGCCTGAGGCCGGAGTAACATTGGATACGTTTTCCTAAGGGACTCTCACTTGGCCGCACCTTTCCTTCACCTCGCGCTGCATGCCCGGGGCAACTC
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| DNA Sequence for Gene |
>RPPX_RS03180
ATGACTTCGCACAATCCCGAACCTCCGGTGCCACTCGCTACGGCGCTACCCGGTGCTGTGCAGCGCCTGCCCTTACTCGAACGCCTGAGTCGCTACCGCC AGCCCATAGGCCTGATGGTGACCCTGTTACTGTTCACGATGGCCTTGATTGCCTGCCGCCACCTGCTGAGCGAGCTGGACATTTATGCCTTGCACGATGC CATGCTCAGCGTGCCAACCCAGTCACTGCTCGGCGCCTTGCTGGCAACGGTGATCGGCTTTGTGATCCTGTTGGGCTACGAGTGGTCGGCCAGCCGCTAT GCGGGCGTGAAACTGCCAGCACGCAGCTTGGCACTGGGCGGCTTCAGCGCCTTTGCCATCGGCAACGCCATCGGCCTGTCGATGCTCTCTGGCGGCTCGG TTCGCTATCGCCTGTACGCACGGCAAGGGCTTGGTGCTGGCGAAGTCGCACGCATGACCGTGTTTGCCAGCCTGTCACTGGGCTGCGCACTGCCGCCCCT GGCCGCCTTGGCGACATTGAGCAACCTGCCGGCGGCCTCGACAGCGCTCGGGTTGGCGCCCAGTCTGCTGGCAGCTGTTGCCAGCGCCGTGCTGGTGGTG TCTGTCTTACTGGCAATTGGCTTGTACCGCCGACGCCTGACCGAGCAACCGGCGGCCAATAACCTGCTCGTTCAACTGGGCCGGCGCACACTTCGCCTGC CGGATGCACGCCTGGCGGCCCTGCAATTGCTGATTACCGCGCTGGATGTGGCGGCGGCTGCCACCGTGCTCTACCTGTTGCTGCCCGAAGCCCCTCCTTT CGGCGCGTTCGTGCTGGTGTACCTGCTGGCCTTGGCTGCGGGCGTGCTCAGCCACGTACCAGGCGGCGTCGGGGTGTTCGAAGCGATCCTGCTGGCGGCC TTTGCCGACCAGCTAGGTGCCGCACCGCTGGCGGCGGCCCTGCTGCTGTACCGGCTGATCTATGTGGTACTGCCACTGCTGCTGGCCTGCGTGTTGCTGC TGGCCAATGAAGCCCGACGCCTGCTGTTTGCGCAACAGGCCATCAAGGCCGCTTCGGGTCTGGCCGCACCGATCCTGTCGATTCTGGTGTTCCTGTCCGG CGTAGTGCTGCTGTTTTCCGGTGCCACGCCCGAGATAGATACGCGTCTGGAACATATGGGCTTCCTGGTGCCACACCGGCTGATCGATGCCTCTCATTTC GGCGCCAGCCTGATCGGTGTGCTATGCCTGCTGCTGGCCCAAGGCCTGCGCCGGCGCCTGTCCGCCGCCTGGCTACTGACCACCGTGCTGTTGCTGGTCG GCGCCCTGCTGTCGCTATTGAAGGGCTTTGACTGGGAAGAGGCTTGCCTGCTGACCTTTACCGCCGCCCTGCTCGCGCTGTTCCGCCGCTCGTTCTATCG CCCCAGCCGTCTGCTGGAGCTACCTTTCTCGCCGGTGTTCCTGGTGGCCAGCGCCTGTACGGTGGGCGCATCAGTGTGGCTTCTGCTGTTCGCCTACCAG GATGTGCCTTACAGCCATCAGCTGTGGTGGCAGTTCACCCTCGATGCCGACGCGCCACGGGGCCTGCGCGCCGCCATGGGCAGTGCCTTGCTGCTGGCTG CCGTGGCACTGACGTGGCTGCTGCGCACAGCGCCGCCCGTGATCCACCTGCCTGACGAAGAAGAGTTGCAACGCGCCAACCGCATCCTGCAGGCCTCCGA CCAACCCGACGGCGGCCTGGCGCTGACTGGCGACAAGGCGTTGCTGTTCCACCCGCGTGGTAACGCGTTCCTCATGTACGCCCGGCGCGGCCGCAGCCTG GTGGCGCTGTACGACCCGATAGGCCCGGCCCAGGAACGCGCCGAGATGATCTGGCAGTTCCGCGATCTGTGCGACCTGCACCACGCACGCCCCGTGTTCT ACCAGGTACGCGCAGAGAACCTGCCGTTCTACATGGACATCGGCCTGACCGCATTGAAGCTCGGTGAAGAAGCCCGGGTCGACTTGCGCCGCTTCGACCT TGAAGCCAAAGGCAAGGAGATGAAAGACCTGCGCTACACCTGGAACCGCGGCGGACGCGATGGCCTGAGCCTGGAGATCCATGAGCCCGGCCACGCCCCG CTGGCTGAGCTGAAGGAAATTTCCGACGCCTGGCTCGGCGGCAAGAACGTGCGCGAGAAAGGCTTCTCGCTGGGGCGCTTCAGCCCAGACTACCTGCAGC ACTTCCGCATAGCCCTGATTCGCTTCCAGGGCCGCCCGGTAGCGTTCGCCAACTTGCTGGAAACCCATGGAAACGAACTGGCCAGCCTCGACCTGATGCG TGCGCACCCCGATGCGCCAAAGCTGACCATGGAGTTCATGATGATCGGCTTGATCCTGCATTACAAAAGCCATGACTACGGGCGTTTCAGCCTGGGCATG GTACCGCTGTCCGGCCTGCAACCAAGGCGCGGCGCACCCTTGACCCAGCGCTTGGGTTCGCTGGTGTTCCGCCGTGGTGAACAGCTTTACAACTTCCAGG GGCTTCGACGCTTCAAGGACAAGTTTCAGCCGGACTGGGAACCCCGCTACATGGCTGTGCCAGCCGGGCTCGACCCGCTGGTGGCACTGGCCGACACCGC CGCCCTGATTGCAGGCGGCCTGACTGGATTGGTGAAACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGACCCGACGCTTTTGGTTGTATCTGCTGGCTCCCCTGCTGCTGGCCGCCCTGGGTGGTGCGCTGGCCTTCTGGCTGTGGACGCGCCCGGCCCCCGAGGC ACGCCTGGAGCAAATGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCCCCTCAAGGCCCGGGTGGCCATCGGCGTGCCACAAGACCAG GCACTGACGGGCAAGCAACTGCTCGACCTGAGCCAGGCCGGTGAAGCCCAGCTGGTGCAGGTGATTCTGCCGCCTGGCGATTGCAGCAAGCAGCAACAGG CCATGGACCAGGCGCTGACCCAACTGCAGGAAAAACCGACCTTGGTCGCCGGTATCGGTCCCGGTGCCGCCCAGGCCTGGCGCTGGCTGGCCAGCCAGAA CGATGACAAGGCGCGAGCCATTTCCGTGGGCTTCACCCTCGAACAGCCTGGCTGCCAGGCACCGCTGCCCAAATCGGCTGCCCATGGCCACTGGAACGTC
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| Amino Acid Sequence |
>membrane protein
MTSHNPEPPVPLATALPGAVQRLPLLERLSRYRQPIGLMVTLLLFTMALIACRHLLSELDIYALHDAMLSVPTQSLLGALLATVIGFVILLGYEWSASRY AGVKLPARSLALGGFSAFAIGNAIGLSMLSGGSVRYRLYARQGLGAGEVARMTVFASLSLGCALPPLAALATLSNLPAASTALGLAPSLLAAVASAVLVV SVLLAIGLYRRRLTEQPAANNLLVQLGRRTLRLPDARLAALQLLITALDVAAAATVLYLLLPEAPPFGAFVLVYLLALAAGVLSHVPGGVGVFEAILLAA FADQLGAAPLAAALLLYRLIYVVLPLLLACVLLLANEARRLLFAQQAIKAASGLAAPILSILVFLSGVVLLFSGATPEIDTRLEHMGFLVPHRLIDASHF GASLIGVLCLLLAQGLRRRLSAAWLLTTVLLLVGALLSLLKGFDWEEACLLTFTAALLALFRRSFYRPSRLLELPFSPVFLVASACTVGASVWLLLFAYQ DVPYSHQLWWQFTLDADAPRGLRAAMGSALLLAAVALTWLLRTAPPVIHLPDEEELQRANRILQASDQPDGGLALTGDKALLFHPRGNAFLMYARRGRSL VALYDPIGPAQERAEMIWQFRDLCDLHHARPVFYQVRAENLPFYMDIGLTALKLGEEARVDLRRFDLEAKGKEMKDLRYTWNRGGRDGLSLEIHEPGHAP LAELKEISDAWLGGKNVREKGFSLGRFSPDYLQHFRIALIRFQGRPVAFANLLETHGNELASLDLMRAHPDAPKLTMEFMMIGLILHYKSHDYGRFSLGM VPLSGLQPRRGAPLTQRLGSLVFRRGEQLYNFQGLRRFKDKFQPDWEPRYMAVPAGLDPLVALADTAALIAGGLTGLVKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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