Pseudomonas putida S12, RPPX_RS02020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S12, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACGTGCTGGCAACGTTCTGGGTGGCGGGGACTGGTCTGCCGAGCGCTTGCTGCCGGATATCTTCCGCGCCTGGCAAGACGGTGAAGAAGTGGTCTTGCGC TATCCCCATGCGACCCGCCCCTGGCAGCACGTGCTCGACCCGCTGATGGGCTATCTGCAGCTGGCGCAGGGCTTGCTCACGGACGCCGAGCGATACGCAA CAGCCTGGAACTTCGGCCCGGACAGCGCAGGGCTGGCCACCGTCGGCGAAATCGTCCGTCGTCTTGCCCTGCGCTGGCCAGGCGATGCGCGCTGGTCGGT CGCCGGCGATGTCCAGGCGCATGAAGCCAGTTTGCTGGCACTGGATTCCAGCAAGGCGCGGCAAGTGCTTTGCTGGGCACCGCGCTGGTCGCTGGATGAC ACCCTGAAACATACCCTGGACTGGCACCTGGCCTGGCGCGCAGGGCGTGACATGAACATCGTTACCCGCGAGCAGATCGCGGTTCACCAAGGCGGAATCC
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| DNA Sequence for Gene |
>RPPX_RS02020
ATGAGTGACAGTACGGCGCAGCAGTTGCGCCAACAGATTGCCGAGCTGGTCGGGCGCTATGCCGAGCTGCAGATGGCGCCCAAACCCTTCGTGGCGGGGC AGAGCAATGTTCCGCCTTCGGGCAAGGTGATCGGTGCCGGCGAGCTGCAGGCAATGACCGAGGCCGTGCTGGATGGCTGGCTGACGACCGGCCGCTTCAA CGAGGCGTTCGAGAAGCGCCTGGCCAAGTACCTGGGGCGTCGCTGCGTACTCACCACCAACTCCGGCTCGTCGGCCAACTTGCTGGCGTTTTCCGCACTG ACCTCGCCACGCCTCGGCGACCGGGCGATCAAGCCGGGTGACGAGGTGATCGGCGTTGCTGCCGGCTTCCCGACCACCGTCAACCCGATCCTGCAGTTCG GCGCGGTTCCGGTGTTCGTCGATATCGAGATGGGCACCTACAACATCGACCCGGCGCTGATCGAAGCGGCCATCGGCCCGAAGACCAAGGCCATCATGCT GGCCCATACCCTGGGCAACCCCTTCGACCTCAGCGTTGTGCGCGCCCTGTGCGACAAGCATGGCCTGTGGCTGATCGAAGACTGCTGCGATGCCCTGGGT TCCACCTACCAGGGTCGCATGGTTGGCGCTTTCGGCGATATTGGCACCCTCAGCTTCTATCCGGCGCACCATATCACCATGGGCGAGGGCGGTGCGGTGT TTACCGACTCGCCGTTGCTCAAGCGCATCATCGAGTCGTTCCGCGACTGGGGCCGCGATTGCTACTGTGCGCCGGGCGAGGACAACACCTGCAGCAAGCG TTTCTGCTGGCAAATGGGGGGGCTGCCGCAGGGCTACGACCACAAATACACCTACTCGCATCTGGGCTACAACCTGAAGATCACCGACATGCAGGCCGCC TGCGCGCTGGCGCAGATGGACCGGGTTGATGATTTCGTTGCCGCGCGCAAGCGCAACTTCGCTTGGCTCAGTGACCGGCTGGCCGGTTGTGCGGACAAAC TGATCCTGCCGCAGGCCACCCGCGAAAGCGACCCTTCCTGGTTCGGTTATCCGATCACCCTACGCGATGGCTGCGGCATCAATCGCGTCGAGCTGTTGCG CTACCTGGATGAACAGGATGTGGGCACGCGCTTGCTGTTTGCCGGGAACCTGACGCGCCAGCCCTACATGCAGGGGCTGCACTACCGGGTTTCCGGTGAG CTGTCGGTGACTGACAAAATCATGAACGACACGTTCTGGATTGGCCTGTGGCCGGGCTTGAGCGACGACCATCTGGAACACGCGGCGCGCTGCCTGGAAA CCTACCTGCAGAGGCCGTGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCGCGCCTACGTCCTGTGTGGTGGTTTCGGTACGCGTCTGCGCAGTGTCACTGACTCGCAGAAGGCCCTGGTTCCCGTTCGCGGTGAGCCCTTTCTGGC GCGCGTACTAAGCCAGTTGGCCCGTGCTGGCGTCAGCGAAGGTGTACTGTGCGCGCATTACCGCGCTGAGCAGGTGGCCGAGCAGCTTGCCGAGCTGTCT CGCCAGGCCGGTCTGCCGCTGTCGATGGTGGTGGAGGAGAACCCTCTGGGAACCGGCGGGGCGCTGCTCAACGCGTTGCGCGAGCAACCTGCGCAGGGGA GGTACTTGGTACTCAATGCCGACACTTTTGTGGAGGTGCAGGGTTACCGTCAGATGCTCCAGAGCGAAGGTAACGCGGTACTGGCGGCTCGGGTCAGTGA CCGCAGCCGGTATGGCAGCTTGGCGCTGACTGCAACCGGGCACATGGCTGCGCTGCAGGAAAAGGGCGTGCCAGGCGCCGGCCTTATCAATGCAGGGGTG
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| Amino Acid Sequence |
>LPS biosynthesis protein
MSDSTAQQLRQQIAELVGRYAELQMAPKPFVAGQSNVPPSGKVIGAGELQAMTEAVLDGWLTTGRFNEAFEKRLAKYLGRRCVLTTNSGSSANLLAFSAL TSPRLGDRAIKPGDEVIGVAAGFPTTVNPILQFGAVPVFVDIEMGTYNIDPALIEAAIGPKTKAIMLAHTLGNPFDLSVVRALCDKHGLWLIEDCCDALG STYQGRMVGAFGDIGTLSFYPAHHITMGEGGAVFTDSPLLKRIIESFRDWGRDCYCAPGEDNTCSKRFCWQMGGLPQGYDHKYTYSHLGYNLKITDMQAA CALAQMDRVDDFVAARKRNFAWLSDRLAGCADKLILPQATRESDPSWFGYPITLRDGCGINRVELLRYLDEQDVGTRLLFAGNLTRQPYMQGLHYRVSGE LSVTDKIMNDTFWIGLWPGLSDDHLEHAARCLETYLQRPC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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