Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS20145 (ampC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCGGCAACAACCAGCCGACGGCAAAGGTGCCAACCGCGCCGACGCTGAGCATTTCGCGGTAGTGCCCGCCTTCGAAGCGGCCGAGGGTTTCGGCGATG CGGTCGAAACATTCGCACAGCACCGGCAGCAGGGTTTCGCCCTCGCTGGTCAGCATCAGCCCGCGGGGCAGGCGTTTGAACAGGGTCACATTGAGCTGGG CCTCGAGGCTTTTCACCTGATGGCTGACCGCCGCCTGGGTCACGCACAGCTCGATGGCCGCGCGGGTAAAACTCAAATGCCGCGCCGAAGCCTCGAAGGC GCGCAGGGCATTCAGCGGCAGATGGGGTCGGATCATGACCACTCCCTAGTTTTTCTAATGGCTCCTGCGAAATATCGTCGTTTGCCGATCCTTCGCCGGC CGCCTACATTGAGCCGGCTCGCAGCGCGCTGCTCCCTGACTGCAAGGGCAGGCGCTGGCAAAAGCCGCTCGGAGTGCAGCGGCCATCACTCTGCAAAATC
|
|
| DNA Sequence for Gene |
>PCHL3084_RS20145
|ampC
ATGGAATGCCAGCCCATCATGCACAACAAAAACCTAGCCCTATCTGGATTTTTCACCATTTCCCTGCTGCTGTCCGGCGCCAGCGCCTGCCTGGCCGCCA GCCAGCCGGACAGCGCGCTCAAGCCCCTGGTCGACGCGGCGATCCGCCCTTTGATGCAGCAACAGGACATCGCCGGGATGGCGGTGGCCATCACTCTCAA GGGCCAGCCCCATTACTTTAACTACGGCCTGGCCTCCAAAGAGGGGAAAAAGGCCGTCGACGCCGACACGCTGTTCGAGGTCGGCTCGGTGAGCAAGCTC TTCACCGCGACCCTGGGGGCCTATGCCCAGGCCAGCGGCAAGCTGTCCCTGAACGACCCGGCCAGCCGCTACCTGCCGGCGTTGAAAGGCAGCGCCTTCG AGCACATCAGCCTGTTGCAACTGGGGACCTACAGCGCCGGCGGCCTGCCGTTGCAGTTCCCGGCGCAGTGGGACAGCCAGGACAAGATGCTCGGCTACTA CCAGGGCTGGAAACCGGCCTTTGCCCCCGGCGCCCAGCGCCTGTACTCGAACCCGAGCATCGGCCTGTTCGGCTACCTGGCCGCGCAAAGCCTGGGGCAG CCCTTCGAGCAACTGATGGAGCAGCGACTGTTCCCGCAGCTGGGCCTGCAGCACAGCTATGTCCAGGTGCCGAAGTCACAGATGGGTAATTACGCCCAGG GCTACGACAAGGACGGCAAGCCGGTGCGGGTCGGCCCCGGCGCCCTGGATGCCGAGGCCTATGGGGTCAAGACCAGCGCCACCGATCTGCTGCGTTTCGT CCAGGCCAACCTCAAGCCCGAGTCGCTGGCGCAACCCTGGCCGCAGGCCATCGCCCTCACCCACACCGGCTATTACCAGGTCGAGGGCATGACCCAGGGC CTGGGCTGGGAGCTGTACCCCTACCCGCTCAGCCTGGACGCCCTGCTGGCCGGCAACTCGTCGCAGATGGCCTTCGAACCGCACCCGACCCGCTGGCTCA CCCCGCCCAAGGCACCGCGGGCCGATACCCTGCTGAACAAGACCGGTTCCACCGGCGGTTTCGGCGCCTATGTGCTGTTCGTGCCCGGCAAGGACATCGG CCTGGTGCTGCTGGCGAACAAGAACTATCCCAACGCCGAACGGGTCAAGGTCGCCCATGCTCTGCTCAAGGCCCTGGATGACGCGCAACCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GAACAACAGCGACCGGCTCGGTTGACGGACCGGTCGCTGGAACGACCAGGAGCGCGTCGCAGCTATGACAACGCGCTCCGCGACGATGATCGGCGCTGGA TAAAAACAGCGGAACGCGCCATCCTCCGCGTCTTTTTTCCGCGCAGCCCCTGGGGCGCACGTTTTTCCAAGGAAACCCTCCATGCACAACCAGCCGCTCA GCCCCGCCGAGTTCGAATTCATCGAAGACACCCTGCTCAAGTATGGCGACGACCACTCCGTGCTCAACCTGGCCGAGCTGGACGGTTTTTGCACCGCCCT GGTGTCCGGCCCGACCCAGGTGGACATTGCCGAATGGTTCCCGGCCATCTGGGGCGGGCAGAACCCGGACTGGCAGGACCCCGAGGAGTGCAAGCGCTTC ATCGAGCTGAGCGTGCGCCATCTGAACGCCCTCGCCACGGCGCTGGCGAGCGACTCGGCGAGCTTTCAGCCGCGCTTCGAACAGACCGAGCATCAGGACC
|
|
| Amino Acid Sequence |
>beta-lactamase/D-alanine carboxypeptidase
MECQPIMHNKNLALSGFFTISLLLSGASACLAASQPDSALKPLVDAAIRPLMQQQDIAGMAVAITLKGQPHYFNYGLASKEGKKAVDADTLFEVGSVSKL FTATLGAYAQASGKLSLNDPASRYLPALKGSAFEHISLLQLGTYSAGGLPLQFPAQWDSQDKMLGYYQGWKPAFAPGAQRLYSNPSIGLFGYLAAQSLGQ PFEQLMEQRLFPQLGLQHSYVQVPKSQMGNYAQGYDKDGKPVRVGPGALDAEAYGVKTSATDLLRFVQANLKPESLAQPWPQAIALTHTGYYQVEGMTQG LGWELYPYPLSLDALLAGNSSQMAFEPHPTRWLTPPKAPRADTLLNKTGSTGGFGAYVLFVPGKDIGLVLLANKNYPNAERVKVAHALLKALDDAQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|