Pseudomonas putida NBRC 14164, PP4_48740 (mrdA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NBRC 14164 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGAATAAGGAAGCGTCGTGCGTCTGCGCCTGATCGCGGTCGGCTCGCGCATGCCGAAGTGGGTCGAGGAAGGCTGGCATGAATATGCCAAGCGCCTGCCC GCCGAGCTGTCGCTGGAGCTGGTGGAAATCCCGCTGAATACCCGTGGCAAGAATGCCGATGTCGCCCGCCTGATCCGTCAGGAGGGCGAAGCCATGCTAA GCAAGGTTCAGCCAGGGGAACGCATTGTCACCCTCGAGGTCCATGGCAAGCCCTGGAGCACCGAGCAGCTGGCGACCGAGCTGGACCGCTGGCGCCTGGA TGCGCGCACGGTGAATTTGATGGTCGGCGGCCCGGAAGGCCTGGCGCCTGAGGTTTGCGCACGCGCCGAGCAACGCTGGTCGCTGTCGCCGCTGACCTTG CCGCACCCGTTGGTAAGGATACTCATCGGCGAGCAGATCTACCGCGCCTGGACCGTGTTGTCCGGGCACCCTTACCACAAATGAGCCTGTAAGCAGTCAG
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| DNA Sequence for Gene |
>PP4_48740
|mrdA
ATGTCGCAGCCGATCCGCCTCAAGGACCACGAGAAAGACGCCCGCCTGGTGCGCAACCGCGTCGTGGTCGGCGCGGTGGCGATCGTGCTGCTTATTTGCG TGCTGATTGCGCGGCTGTACTACCTGCAGATCATCCAGTACGACTACCACTCGACGCTGTCGGAGAACAACCGGGTGCATGTGCAGCCGATCCCGCCGAC CCGCGGGCTGATCTTCGACCGCAACGGGGTGATCGTTGCCGACAACCGGCCCAGCTTCAGCCTGTCGATGACCCGCGAACGTGCGGGTAACTGGCAGGAA GTGTTGGATACCATCGTCGAAGTGCTGGATTTGACGACCGACGACCGGGCCCTGTTCGAGAAGCGCATGCGCCAGGGCCGTCGGCCGTTCGAGCCGGTGC CGATCCTGTTCGAACTCAACGAAGAGCAGATCGCCCGGGTGGCGGTGAACCAGTTCCGCCTGCCAGGCGTGGAAGTGGTGGCCCAGCTGGTGCGGCATTA CCCGCAGGGTGCGCATTTCGCCCACTCGGTGGGTTATGTGGGGCGCATCAACGAGAAAGAGCTGAAAACCCTCGACCCGGTGAACTACAGCGGCACCCAC CATATCGGCAAGACCGGCATCGAGCGCTTCTACGAAGACGACCTGCACGGCCAGGTCGGCTACGAGGAAGTCGAGACCAACGCTCGGGGCCGCGTGCTGC GGGTGCTCAAGCGCACGGACCCGAAACCGGGCAAGGACATTGTGCTGAGCCTGGACATCAAGCTGCAGGAAGCCGCCGAGGCCGCCCTGGGTGGCCGGCG GGGCGCAGTGGTAGCACTCGACCCACGTACTGGCGAGGTGCTGGCGATGGTCAGCCAGCCAAGCTTCGACCCCAACCTGTTCGTCACCGGCATCAGCTTC AAGGCCTATGCCGAACTGCGCGACTCGATCGACCGGCCGCTGTTCAACCGCGTACTGCGTGGCCTGTACCCGCCCGGTTCGACCATCAAGCCGGCGGTGG CCATCGCCGGCCTGGACAGTGGCGTGGTCAATGCCAGCAGCCGGGTGTTCGACCCGGGTTATTACCAACTGCCCAACTATGACCACAAATACCGTAACTG GAACCGCTCCGGCGATGGCTGGGTCGACCTGGACACCGCGATCATGCGTTCCAACGACACCTACTTCTACGACCTTGCGCACAAGATGGGCATCGATCGG CTGTCCAGCTACATGAACAGGTTCGGCATCGGTCAGCGGGTTTCCCTCGACATGTTCGAGGAGTCTGCCGGCTTGATGCCTTCGCGCGAATGGAAGCGTG CCACCCGCCGCCAGGCCTGGTTCCCTGGTGAAACCCTGATTCTCGGTATTGGCCAGGGCTACATGCAGGCCACGCCGCTGCAGCTGGCCCAAGCCACTGC GCTGATCGCCAACAAGGGCGTGTGGAACCGCCCGCACCTGGCCAAGACCATCGAAGGCCAGCAGCCTGTGGACGAAAACCCCATGGAAAACATCGTGCTG CGTGACAAGTCCGACTGGGCCAAGGTCACCCATGGCATGGAGCAGGTAATGCACGGCGCCCGCGGTACTGCGCGCAAGGCTGCCGCCGGCGCCCAGTACC GCATTGCCGGCAAGAGCGGTACCGCCCAGGTGGTGGCGATCAAGCAAGGCGAGAAGTACGACCGCAACAAGCTTCAGGAGCGCCACCGCGACCACGCCTT GTTCGTCGCCTTTGCCCCGGCCGAAGCCCCGAAAATCGTGGTATCGGTGATGGTCGAGAACGGTGAGTCCGGCTCGGGCGTGGCTGCGCCCGTGGTACGC CAGATCATGGACGCCTGGCTGCTCGACGAAAATGGCCGGCTCAAGCCCGAGTTCGCGCCTGCCACCGTTACCCAGGAATCGGCCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAACAATTTCGATCGCATGCTCTCCAGTGAGGATGTGATGCGTCGGCGCGCCAGCTTTCTGCAGCGCATCCATGTCGACGGCCCCTTGCTGATCATTCT GCTCACCCTTGCGGCCGGCAGCCTGTTCGTCCTTTATTCGGCCAGTGGCAAGAACTGGGACCTGCTGCTCAAGCAGGCCACCTCGTTCGGCATCGGCCTG GTGTCGATGTTCGTCATCGCCCAACTGGAGCCGCGCTTCATGGCACGCTGGGTGCCGCTGGCGTACCTGACCGGGGTGCTGTTGCTGGTGGTGGTGGACG TGATGGGCCACAACGCCATGGGCGCCACGCGCTGGATCAACATTCCCGGCGTGATCCGCTTCCAGCCCTCGGAATTCATGAAGATCATCATGCCGGCGAC CATCGCCTGGTACCTGTCCAAGCGCACCTTGCCGCCCCACTTGAAGCACGTGGCGATCAGCCTGGTGCTGATCGGCGTGCCGTTCATCCTGATCGTGCGC
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| Amino Acid Sequence |
>penicillin-binding protein 2
MSQPIRLKDHEKDARLVRNRVVVGAVAIVLLICVLIARLYYLQIIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGVIVADNRPSFSLSMTRERAGNWQE VLDTIVEVLDLTTDDRALFEKRMRQGRRPFEPVPILFELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKELKTLDPVNYSGTH HIGKTGIERFYEDDLHGQVGYEEVETNARGRVLRVLKRTDPKPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVNASSRVFDPGYYQLPNYDHKYRNWNRSGDGWVDLDTAIMRSNDTYFYDLAHKMGIDR LSSYMNRFGIGQRVSLDMFEESAGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHLAKTIEGQQPVDENPMENIVL RDKSDWAKVTHGMEQVMHGARGTARKAAAGAQYRIAGKSGTAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPAEAPKIVVSVMVENGESGSGVAAPVVR QIMDAWLLDENGRLKPEFAPATVTQESAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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