Pseudomonas putida NBRC 14164, PP4_37820
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0015562 | efflux transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 279 | 299 | - |
| Pfam | PF02321 | Outer membrane efflux protein | IPR003423 | Outer membrane efflux protein | 273 | 451 | 1.5E-21 |
| Gene3D | G3DSA:2.20.200.10 | Outer membrane efflux proteins (OEP) | - | - | 88 | 342 | 4.6E-94 |
| Gene3D | G3DSA:1.20.1600.10 | Outer membrane efflux proteins (OEP) | - | - | 41 | 452 | 4.6E-94 |
| NCBIfam | TIGR01845 | JCVI: efflux transporter outer membrane subunit | IPR010131 | RND efflux system, outer membrane lipoprotein, NodT | 4 | 452 | 1.7E-75 |
| SUPERFAMILY | SSF56954 | Outer membrane efflux proteins (OEP) | - | - | 3 | 454 | 1.83E-81 |
| Coils | Coil | Coil | - | - | 370 | 393 | - |
| Coils | Coil | Coil | - | - | 180 | 200 | - |
| PANTHER | PTHR30203 | OUTER MEMBRANE CATION EFFLUX PROTEIN | - | - | 3 | 454 | 3.8E-71 |
| Pfam | PF02321 | Outer membrane efflux protein | IPR003423 | Outer membrane efflux protein | 51 | 244 | 1.7E-15 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.