Pseudomonas putida NBRC 14164, PP4_28960 (vgrG)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NBRC 14164 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGGCCGTGATGAGCCGCCCGTGGGGCAGCAATTCGTGCTGGAGCCACCAGCCGCTGCTCAGCATCTTCCACGACGAAACCCAGGGCGGCGAAAAGATC TTCGTGCTGCTCGAGCGGGTCATGCAGGCGCCCAGGGAATTCCAGGATGTACTGGAGTTCCTGTACTACTGCTTCTGCCTGGGCCTCAGGGGCAAGCACG CCCTGGACCCCAAGTGCGAAGACATCATCAAAGCCTTGATCTCGCGCATGCACACGGTCATCCGCGAACTGCGTGGCCCCACGCCGGAAGAGGTGTGCGA CCCCTACAGCAACGTCGTTCATTGCCCCCACCGCCCGCGACGCTGGGAGTGGCCCTGGTGGAGCCCGCTGGTGATCTCCGCCGTCGCCATGGTCTGCGCT TACAGCTACTACAGCTACTACAGCTACCGCCTCGACCTGCTCACCGCCGAAGTCCTGGAATCGCTCAACGCGATTCTGCAGCAGTAGCAGGGGCCGCCAT
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| DNA Sequence for Gene |
>PP4_28960
|vgrG
ATGCCTAGCCAATCCGATTTGCGCTTTACCTTCCAGCCGCTGGCTGGCCGGAGTGAGTTCGAAGTGGTGTCGTTCGAACTGGACGAAGCCATCAGCACGC CGTTCCAGCTGAAGCTGGAACTGGTCAGTTTCGAAGACGATGTCGACTTTGGCCAGTTGCTCGACAAGCCGGTGCTGTTCACGATCTGGCGCGGCGAGCG CCCGCTGCGTTACGTGCACGGCCTGGTCAGCACCTTCAGCCAGGGTGAAACAGGCTTCCATCGCACCCGTTACCGCGCCCTGGTCGAACCCGTGCTGGCC CGCGCCGGGCTGCGCTCGAACTGGCGCATCTTCCAGCAGAAAACCGTGCCGCAGATTCTTGAGATCATGCTCAAGCGCCAGGGCATCACCGGCTACGAGC TGAGAAGCATCGACAAGCATGAGGTGCGCGAGTTCTGCGTGCAGGCCGGTGAAACCGACCTCGACTTCATCGCCCGCCTGGCCGCCGAAGAGGGTTTTGT CTACCGCTTCGAGCACACGCCAAAACTGCACAAGCTGCTGATCACCGACCGGCTGCTGGGGCTGGGGCAGATCAGCCAGGGCGCCATCAAGGGCGATGAC GAGGACGAAGTTTTCTTTGACGACGACACCGACCCCAACCAGGTGCTGTACCACGCCAACAGCGGCGGCAACCAGGCCAGGCCGTGCCTGCGCCGCCTGC GTTACAGCGAGCAGGTACGTACCGCGCGCCAGGTGCAGCGCGACTACACCTTCACCCACCCGGCCTACCGCCAGGAGCAACGTGCCGACGGCAGCGACCT GAAGCACCAGTCCACCACGTACGAGCGCTTCGACTACCCCGGCCGCTACAAGCGCGGGGCGGTCGGCGCGCCCTTCACCGCCACCCGCATCACAGCCTGG CGCCATGACGCCCGCATGGCCGAGGTGGGCGGCGACGACGTGCGCCTGCAGCCGGGGCTGAGCTTCACCCTGATCGAGCACCCGCGCAACGACCTGAACA TGCATTGGCGTGCAACCCGCGTGCACCATGAAGGCACCCAGTTCACCAGCCTTCAGGAAGAGGCTGCGGGTGCCCGGCAAGACACCCGCTACACGCAGGC AGCCGTGCTGGTGCCCGGCAGAACCGAATGGCGCCCGGCGCCGTTGCCCAAGCCGCGCATCGACGGCCCGCAGATGGCGACGGTGGTGGGGCCCAAGGGC GAGGAAATCTACTGCGACCAATGGGGCCGGGTGAAGGTCAGCTTCCCCTGGGACCGGGAAAGCCAGGACAACGAGTTCAGTTCCTGCTGGGTACGCGTGT CGCAAGGCTGGGCCGGTGGCAGCTGGGGTTCGATGGCCATTCCGCGCATAGGCCAGGACGTGATCATCCAGTACGTCGACGCCGACCCGGACCAGCCGAT GATCACCGGGCGCACCTACTGTGGCAATCAGCTGCCGCCGTATGACCTGCCCAAGCACAAGACGCGGATGACCATCAAGAGCCAGACCCATAAGGGCGAT GGCTTCAACGAACTGCGTTTCGAGGATGAACTGGGCAAGGAGGAAGTGTTCATCCATGCCCAAAGGAACCAGGTCAATGTGGTGGGCAATGACGAAACCA CGACTATCGGGCGCAATCGAGTGGAGCAAGTTGGCCAGGATGAGCAACTGACCATCGGCAACAACTTCCGCCAGGACACGGCCCGTGACCATACCCAGGT CATCGGGCAAAACAGCCGTGTGGACATCAAGCATGACCTGAACGAACAAGTGGGCAACAACCGCAGCGAGTCAACGGGCGCCAACCAGCGGGTTGTCATC GGCAACAACAGCGAGCTTGTGATCAAAGGGGTTCAATCGATCAGCGTCGGACAGGGGGTGCAAACACGCACGACGGTCTACCAGTTGCTGGCCAGTGAAC GCATCGAGTTCAGAAGCCCCGGCGGCAGCATCGTGCTGGATGCCCAGGGCATTACCATCAACGGCTTGACACTCGATCTGCAGGGGCAGACCAAGGCGGT AGCGAAGGGGGATGGCAATAGTCAGTCACTTGAGTTTACGGCTGATGGCAGTAACAAGTGCGAGGTCAAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGATCGAGAACCTGGCCCGCAGCATTGAAGGGCACCATGCGGCGCATTTGCATTGCCATGTACTGATAGACCCACTGGCGGTTACGGCTGGAAGCGACCA AAACTTGCTTGCCCGACTGCGCGAAACGTTAGGCGAAGCGGCGTTGACGCGTGTGCACAGGGCCGATCTGGCCCATGTGCCTCACCTGCACCCGGTATTG GCCTGCTTGGCCTCGCCCGGATCTTTTCCCCGCAGTGACTTGCTCGAATTGACGGCTCGTGCAGCGTACAGAGGGCTGCACCAGCACCGACGCTACTTGA GTGGCTGGCTGTTCAGCGAGGCAACACCGGCCACTGTAGCCGCTCACCTCACGGCCATGTGCCAAATACCCGATGCCAAGCGCCACTTCAACTTTTACCC AGTCTATGAACCCGTTCGCCTGGAGCTGCTCGCGGCAACGTTCAAGCAGGTCGAGCATGGCCCGTGGTGGCCGATCAACAGCTGGTTGTTCCTGAGTAGC
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| Amino Acid Sequence |
>putative type VI secretion system effector VgrG
MPSQSDLRFTFQPLAGRSEFEVVSFELDEAISTPFQLKLELVSFEDDVDFGQLLDKPVLFTIWRGERPLRYVHGLVSTFSQGETGFHRTRYRALVEPVLA RAGLRSNWRIFQQKTVPQILEIMLKRQGITGYELRSIDKHEVREFCVQAGETDLDFIARLAAEEGFVYRFEHTPKLHKLLITDRLLGLGQISQGAIKGDD EDEVFFDDDTDPNQVLYHANSGGNQARPCLRRLRYSEQVRTARQVQRDYTFTHPAYRQEQRADGSDLKHQSTTYERFDYPGRYKRGAVGAPFTATRITAW RHDARMAEVGGDDVRLQPGLSFTLIEHPRNDLNMHWRATRVHHEGTQFTSLQEEAAGARQDTRYTQAAVLVPGRTEWRPAPLPKPRIDGPQMATVVGPKG EEIYCDQWGRVKVSFPWDRESQDNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVDADPDQPMITGRTYCGNQLPPYDLPKHKTRMTIKSQTHKGD GFNELRFEDELGKEEVFIHAQRNQVNVVGNDETTTIGRNRVEQVGQDEQLTIGNNFRQDTARDHTQVIGQNSRVDIKHDLNEQVGNNRSESTGANQRVVI GNNSELVIKGVQSISVGQGVQTRTTVYQLLASERIEFRSPGGSIVLDAQGITINGLTLDLQGQTKAVAKGDGNSQSLEFTADGSNKCEVKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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