Pseudomonas putida NBRC 14164, PP4_22510
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NBRC 14164 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGCGGCTTCAATGCGGGCGAAGTGTGCTTGCGCCTGGTCGATCAGGCCTGCCGGGTTTCGGTCGTCACGGGGCTGGCCAGCCTGCAGCCACTGCGTGG CCCGGCCCGGGTGGTGCAGGCCGGGCAGCAGGCCAGCTTGCAGGTGGCAGACGTCGGGCCGGTCACAGTCCTGGACGAATGGTTGTTGGGTTGGCGCGAA GGCGTGCTGCGGCTGGATGACCGCCCCTTGGGCGAGCTGTTGCATGAGCTGCGAAGGTATCGCCACGGTGTGCTGCGCTGGGCGCCGGAACTGGAACGCC TGCGGGTGACTGGCACTTTCCGCCTGGACGATACCGACCGGGTGCTGGCCTTGCTGGCCGCCAGCCTGCCATTGCAGGTGCAGACGCGCACGCGTTACTG GGTGAGCCTGGCGGCGCGAGAAAATCGCGCATGAGGCTGTCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGCAGAAACCAAAGGGGAGCCTTGTTCA
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| DNA Sequence for Gene |
>PP4_22510
ATGCCTGCACTAATGTCTTGCCGCCTGCGCCCACTGGTGCGCGCAGCGCGTCCGTTGTTTGCCATGAGCCTGTTGTTGTGTGCACCCGCCTGGGCCGATG AAGCGGCGCGGCGTGCCTATCAGGTGCCAGCCGCCAGCCTGGGCGCCGCACTCACCCGGTTTGCCGACCAGGCCGGCGTCAGCCTTTCGCTGGACCCGGC ACTGGTCCAGGGCCGGCAGAGCAATGGCCTGTCGGGTCGCTACAGTGTCGAAGAAGGGTTCTTGCAGCTGCTGAGTGGCAGCGGCCTGCAATTGCTGCCC GTGGGTGAGGGCGCGTTCACTCTGGTACCGGCACCCCAGGCGGGTGGCGCGCTGGAAATTGCCCCTACCAGCATTGTCGGCGGCCTGGCGGCAGGCGGTG AAGCACAGCCATATGCCGGTGGGCAGGTTGCGCGCCAAGGTGCACAGGGCCTGCTTGGCGCACGCGATTTCATGGAAACCCCGTTCAGCATCACCAGCTA CACCAGCGAGCTGGTGAAGAACCAGCAAGCACGCACCTTGGGCGAGCTCATCGCCACCGACCCCTCGGTGCGTGCGACCAACCCGGCGGGTGGGCGTTTC GAGCAATTCACCATTCGCGGCTTCAGCCTGTTCAACAGTGACGTGGCGTACAACGGCCTGTACGGCATCTTGCCGACCTACTCGATCGACATGGAAATGG CCGACCGGGTCGATATCATCAAAGGCCCCAGCCAGTTGATCAACGGCATTTCACCGCGTGGCAGCGTGGGCGGCGGCATCAATGTGCAGCCCAAGCGGGC CGGCGACAAGCCGATCACCGAGTTCACCGGCAGCTATGCGTCGGCTGGCCAGGCAGGCGGCGCGGTGGACGTTGGCCGGCGCTTTGGCGAAGGTCAGCAG TTTGGCGTGCGCTTCAACGGTGTGAAGCAGGCGGGCGATACCGAGTGGGACCACCAGCGCGTCGAGCGCGAAATGGCGGTGCTGGGCCTGGATTTTCGTG GCGAGCGCCTGCGGTTGTCGGCAGACCTCGGCCACACCGAGCGTGACACCGATGCGCCGCAAGAGCGTGTGCTGGTCGGTGCCAACGCCAAAGTGCCGGA CGCCAACGATGTACGCCACAACTATGCCCAGGCCTGGAGCAAGGCGCGCACCAACGACACCTTTGGCGCACTGCATGCCGAGTACGACGTCAGCGAGTCG CTGCTGGCCTATGGCGCTATCGGCGCGCGCAAAAGCAACCATGACTTCCTGCGGCACAACGTATCCATCACCAACGATGCCGGTGACTTCACCGTGCAGC CGCGCGACTTTACCCGCGATGAAACGGTGCGCACCGCCATGGCGGGTGTGCGCAACTGGTTCCACACCGGGCCAGTCAGCCACGAACTGAACCTGGCCGC TACCTACTTCTACATGGACTTCACCAACGGCGGCGCGCGCTATGCTTCGGCGCCCAGTAACCTCTACAACCCGGTAGCGACACCGATGCCTGGTACGCCC ACCCGCATTGATCCAGAGGTCTACACGGAAAACCGCTTCTCTGGCGTGGCTTTGGCCGACACCCTCGGGTTTTTCGATGACCGCCTGTTGCTGACCCTGG GGGCACGTTGGCAGCGGGTGCAAGTGGATGACTGGAGCGATGGCGTCAAAGGCGACACCGCCTACGACGAAGAAAAAGTCTCGCCCTCTGGCGGCGTGTT GCTCAAGGTTACCGACCAGCTGTCGTTGTACGCCAACTACATGGAAGGCCTGAGCCAGGGCAAGATCGCACCGTCGACCTCGGTCAACGAAGACCAGATC TTCCCGCCGTTCACCAGCCGCCAGGTTGAGGTGGGGGCCAAGTACGACCTGGGCCAGGTCGCCTTTACCGCCAGTGCCTTCCGCATCCGCCAGCCGGCCT ACGAGACCAACGCCACTTCGCGGGTGTTCGGCCCCAATGGCAAACGCGACAACCGTGGTATCGAGCTGAGCGTGTTCGGTGAGCCCGTACAAGGGGTGCG GGTGCTGGGTGGGGTGATGTATATCGACAGCGAGCTGACCGATACCGTGGGTGGCGCCGTTGATGGCAACCGCGCGCCGGCCACGCCCGAGTACAACGTC AACCTCGGCGCCGAATGGGACGTGCCGGGAGTGAGTGGCCTGACACTGACGGCGCGGGGCATTCACTCCAGCTCGCAATACCTGGACCAGAACAACAGCA AGCAGATCGACGGCTGGGAGCGCTACGACCTGGGGGCGCGCTACGCCTTCAACGTGGACGCTACCGAGGTTACCTTGCGGGCCAGTGTCGAGAACGTGCT GGATGATCGCTACTGGAGCTCGGCCGGTGCCTCGGATGACAGTGAGCCGGGGCTGACCCTTTCCACGCCGCGGACCTACCTCCTATCGGCAACCGTAGGT TTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCAAGCAGCCGGGGCCGCTTTGCGGCCCATCGCCGGCAAGCCAGCTCCAACACTGGCAAGCCAGCTCCAACACTGTTCGCGCCAGCCGGGAACAATGCC ATCCTTGTGGGAGCTGGCTTGCCGGGGATGGGCTGCGCAGCAGCCCCAATGGCCTCACCAGCCTACATCGCCCGCCCAAGCTTTTGCGCCTGGCCCTGCA ACACGCGCATCAGGTGCATCGCCGCATGCGATGGCGGCTCGAAGCGCGAATAGACAAAGCTGATGTCGAAGTGAATTTCGTCCGCCAGCGGCACCACCGC CAGGCCGCTGTCCTGCGCCACGAATTCGTCGATCACGCTGATGCCCATGCCTTGCTTGACTAGCGCCACAGCCTCGTTGGCATTGGTGAACGACAAAAGT GACGGCAATTGCGCGCCGTGGCGCTCGATGTGCTCGGCAAGCAGCTTGCCAAACGGCATGTCGGGCCTGAACAGCAGCAGCGGATGGCCTTCCAGTTGTT
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| Amino Acid Sequence |
>putative TonB-dependent receptor
MPALMSCRLRPLVRAARPLFAMSLLLCAPAWADEAARRAYQVPAASLGAALTRFADQAGVSLSLDPALVQGRQSNGLSGRYSVEEGFLQLLSGSGLQLLP VGEGAFTLVPAPQAGGALEIAPTSIVGGLAAGGEAQPYAGGQVARQGAQGLLGARDFMETPFSITSYTSELVKNQQARTLGELIATDPSVRATNPAGGRF EQFTIRGFSLFNSDVAYNGLYGILPTYSIDMEMADRVDIIKGPSQLINGISPRGSVGGGINVQPKRAGDKPITEFTGSYASAGQAGGAVDVGRRFGEGQQ FGVRFNGVKQAGDTEWDHQRVEREMAVLGLDFRGERLRLSADLGHTERDTDAPQERVLVGANAKVPDANDVRHNYAQAWSKARTNDTFGALHAEYDVSES LLAYGAIGARKSNHDFLRHNVSITNDAGDFTVQPRDFTRDETVRTAMAGVRNWFHTGPVSHELNLAATYFYMDFTNGGARYASAPSNLYNPVATPMPGTP TRIDPEVYTENRFSGVALADTLGFFDDRLLLTLGARWQRVQVDDWSDGVKGDTAYDEEKVSPSGGVLLKVTDQLSLYANYMEGLSQGKIAPSTSVNEDQI FPPFTSRQVEVGAKYDLGQVAFTASAFRIRQPAYETNATSRVFGPNGKRDNRGIELSVFGEPVQGVRVLGGVMYIDSELTDTVGGAVDGNRAPATPEYNV NLGAEWDVPGVSGLTLTARGIHSSSQYLDQNNSKQIDGWERYDLGARYAFNVDATEVTLRASVENVLDDRYWSSAGASDDSEPGLTLSTPRTYLLSATVG F
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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