Pseudomonas putida NBRC 14164, PP4_12190 (dapA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00701
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppun00261 Monobactam biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppun00300 Lysine biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppun01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppun01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppun01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppun01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppun01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00701 Dihydrodipicolinate synthetase family IPR002220 DapA-like 2 288 8.2E-60
PIRSF PIRSF001365 DHDPS IPR002220 DapA-like 1 297 1.0E-83
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 129 146 1.4E-14
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 72 90 1.4E-14
Coils Coil Coil - - 279 297 -
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 36 57 1.4E-14
SMART SM01130 DHDPS_2 IPR002220 DapA-like 2 290 7.6E-96
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 1 289 1.1E-84
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 104 120 1.4E-14
CDD cd00408 DHDPS-like - - 6 286 2.99399E-101
SUPERFAMILY SSF51569 Aldolase - - 1 289 2.2E-85
PANTHER PTHR12128 DIHYDRODIPICOLINATE SYNTHASE IPR002220 DapA-like 2 291 1.8E-58

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.