Pseudomonas putida NBRC 14164, PP4_09250 (pcaF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NBRC 14164 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCGATGCCGTCGCTGGCGGCGCGCTTCTACCCGACCCAGGGCCGTGCCACGGGTGTATCGTGGATGCTGGGTATCGGCCGCTTCGGTGCGATTCTCG GGGCCTGGAGCGGCGCGACGCTGCTGGGGCTGGGGTGGAACTTCGAGCAGGTGCTTACCGCGTTGCTGGTGCCTGCGGCGCTGGCGACCGTAGGTGTGAT CGTGAAAGGGCTGGTCAGCCACGCCGACGCGACCTGAGGAGCGAGGGCCGCTTTGAGGACCATTCGCAGCACAAGGCTGCTCCCACAGGGGGAGCAGCCT TGTGTCGCGATAGGGCTGCTCAGCAGGCCCGGCATCCAGATAAGTAGCAGCGCAACAAATGGTTCGATAACCGCACGAATAGTCGATTATCGGATTGTAA GCCTACCGCCACTCTCCTTAATCTGAGCTCATCGAAGCACCCTGACCAGTAGCCTCCACACGTACCGCCGCGGCCTATGGCCAGTGGCAGGAGAAGCCTA
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| DNA Sequence for Gene |
>PP4_09250
|pcaF
ATGCGCGACGTATTTATCTGTGACGCCATCCGCACCCCCATCGGCCGCTTCGGCGGCGCCTTGGCGGGTGTGCGTGCCGACGACCTGGCTGCCGTGCCGC TGAAAGCGCTGATCGAGCGCAACCCTGCGGTGCAGTGGGACCAGGTTGATGAAGTGTTCTTCGGCTGCGCCAACCAGGCCGGTGAAGACAACCGCAACGT GGCGCGCATGGCGCTGCTGCTGGCCGGCCTGCCGGAGAGCATCCCGGGCGTCACCCTGAACCGCCTGTGCGCGTCGGGCATGGATGCCATCGGCACTGCC TTCCGCGCCATCGCCAGCGGCGAAATGGAGCTGGCGATTGCCGGCGGCGTCGAGTCGATGTCGCGCGCACCGTTCGTCATGGGCAAGGCTGAAAGCGGCT ATTCGCGCAACATGAAGCTGGAAGACACCACCATCGGCTGGCGCTTCATCAACCCGCTGATGAAGAGCCAGTACGGTGTGGACTCCATGCCGGAAACTGC CGACAACGTGGCCGACGACTACCAGGTTTCGCGCGCTGACCAGGACGCTTTCGCCCTGCGCAGCCAGCAGAAGGCTGCAGCCGCCCAGGCTGCCGGCTTC TTCGCCGAAGAAATCGTGCCGGTGCGCATTGCCCACAAGAAGGGCGAAACCATCGTCGAGCGTGACGAGCACCTGCGCCCGGAAACCACGCTGGAGGCGC TGACCAAGCTCAAGCCGGTCAACGGCCCGGACAAGACTGTCACCGCCGGCAACGCCTCGGGCGTGAATGACGGTGCTGCGGCGCTGATCCTGGCGTCGGC GGAAGCGGTGAAGAAACACGGCCTGACCCCGCGTGCCCGGGTACTGGGCATGGCCAGCGGCGGTGTTGCACCACGGGTGATGGGCATCGGCCCGGTACCG GCAGTGCGCAAGCTGACCGAGCGCCTGGGTGTGGCGGTGAGTGATTTTGATGTGATCGAGCTCAACGAAGCCTTTGCCAGCCAAGGGCTGGCGGTACTGC GTGAGCTGGGTGTGGCCGACGATGCGCCGCAGGTGAACCCGAATGGCGGTGCAATCGCCCTGGGCCATCCGCTGGGCATGAGCGGTGCGCGCCTGGTGCT GACTGCGCTGCATCAGCTGGAGAAAAGTGGCGGGCGCAAGGGCCTGGCAACCATGTGCGTGGGTGTCGGCCAAGGTCTGGCGCTGGCCATCGAGCGGGTG TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTTACCGGCCTCTTCGCGGGTGAACCCGCTCCCACAGGGATCCACGCAACCCCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGACCTGTCAGACGTA GGGCCAATTGCCAGCCAGATAGCGGAACGAGTGTGTTACCAGGTATGTCTAGACTTACCTAGGACCCTCCAGGAGTAAAACCGTCATGACCTCAACCTAT TACACCGGCGAAGAACGCAGCAAGCGCATCTTCGCTATCGTCGGTGCCTCATCAGGCAACCTGGTGGAATGGTTCGACTTCTACGTCTACGCCTTCTGCG CAATCTACTTCGCCCCGGCCTTCTTCCCCTCCGACGACCCTACGGTGCAGCTGTTGAACACGGCCGGTGTGTTCGCCGCAGGCTTTTTGATGCGCCCCAT CGGTGGCTGGATCTTCGGCCGCCTCGCAGACCGCCATGGTCGCAAGAATTCCCTGATGATCTCGGTGCTGATGATGTGCTTCGGCTCCCTGATGATCGCC
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| Amino Acid Sequence |
>beta-ketoadipyl-CoA thiolase PcaF
MRDVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIERNPAVQWDQVDEVFFGCANQAGEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTA FRAIASGEMELAIAGGVESMSRAPFVMGKAESGYSRNMKLEDTTIGWRFINPLMKSQYGVDSMPETADNVADDYQVSRADQDAFALRSQQKAAAAQAAGF FAEEIVPVRIAHKKGETIVERDEHLRPETTLEALTKLKPVNGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRARVLGMASGGVAPRVMGIGPVP AVRKLTERLGVAVSDFDVIELNEAFASQGLAVLRELGVADDAPQVNPNGGAIALGHPLGMSGARLVLTALHQLEKSGGRKGLATMCVGVGQGLALAIERV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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