Pseudomonas putida NBRC 14164, PP4_08860 (bifA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NBRC 14164 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGGACGTCGTCGCCTTACCAAGCGAGGCTGCTCAGAAATCCGTCGCCTGCTGCATAACGCGGCGATGTCAGCCAGCCGGACGGCCACTTGGAAAGGGCT CTACGAACAGCATCGCAATGCGGGTAAAGCAACAACCCAGGCGTTGGTAATCCTGGCCAGGAAGCTTGCACGAGTGGCATTCGCCCTGATGAAGAATCAG GACGAATATGTCACCAAGGGTGGGAAAGCGCCTTGCTGAAAACCATAGAATCTCCCACAGATACGGCGCTGCCGGTGAACTTGATGTTATCCCTGCGGGA GCGGGCGTGCCCGCGAAGAGGCCGGCACGGTTTTGCTTGCTCAGCCCGTATACCGCGCTAACATCAAACCTCTGGAAGATTGACACAGCGCACTCAAGTT GCGGGGTCAGGCAACCGATACACTGCTCATGATCGGCCGGTAGTGTATCGTCATCGTTGATGGCAAAATGATGCCATGCGCATGGATTAAGGAAACCCCA
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| DNA Sequence for Gene |
>PP4_08860
|bifA
TTGAAGCTGGAATTGCGGAACAGCTTGTCGGTCAAGTTGCTCAGGGTCGTGCTGCTGTCGGCGTTGGCGGTTGGCGTCGTGCTCAGCTGTGCGCAAATTG TCTACGACACTTACAAGACCCGCCAGGCCGTGAACAACGATGCCCAGCGCATCCTCGACATGTTCCGCGACCCCTCCACCCAGGCGGTGTACAGCCTCGA CCGCGAAATGGGCATGCAGGTGATGGAAGGCCTGTTCCAGGACGAGTCGGTGCGCATGGCGTCCATCGGCCACCCCAACGAAACCATGCTGGCAGAAAAG TCCCGCCCGCTGCAGGACATGTCCATGCGCTGGCTGACCGACCCGATCCTCGGCCAGGAACGCACCTACACCACGCAACTGGTCGGCCGCGGCCCCTACA GCGAATATTACGGCGACCTGAGCATTACCCTGGACACCTCGTCCTACGGCGAAGACTTCCTGATCAACGCGGTGATCATCTTCATTTCCGGCGTACTGCG GGCCTTAGCCATGGGCCTGGTGCTGTACCTGGTCTACCACTGGCTGCTAACCAAGCCGCTGTCCAAGATCATCGAGCACCTCACCCAGATCAACCCCGAC CGCCCCAGCCAGCACCAGATACCGCTACTCAAGGGCCACGAAAAGAACGAACTGGGCCTCTGGGTCAATACCGCCAACCAGTTGCTGGCATCGATCGAGC GCAATACCCACTTGCGCCATGAAGCCGAAAACAGCCTGCAGCGCATGGCCCAGTACGATTTCCTCACCGGCCTGCCCAACCGCCAGCAACTGCAGCAGCA ACTGGACAAGATTCTCGTCGACGGCGGCCGCCTGCAACACCGTGTGGCGGTGCTCTGCGTGGGTCTGGACGACTTCAAGGGCATCAACGAGCAGTTCAGC TACCAGGTCGGTGACCAACTGCTATTGGCCCTGGCCGACCGCCTGCGGGCCCACAGCGGCCGCCTGGGCGCTTTGGCGCGGCTGGGCGGTGACCAGTTTG CCCTGGTGCAGGCCAATATCGAGCAGCCGTACGAGGCGGCCGAACTGGCGCAAAGCATCCTCGACGACCTGGAAGTGCCCTTCGACCTCGACCACCACCA GCAGATCCGCCTGCGCGCCACCATCGGCATCACCCTGTTCCCCGAAGACGGCGACAGCACCGAGAAGCTGCTGCAGAAAGCCGAACAGACCATGACCCTG GCCAAGGCCCGTTCGCGCAACCGCTACCAGTTCTACATCGCCAGCGTCGACAGCGAGATGCGTCGCCGCCGCGAGCTGGAAAAGGACCTGCGCGAAGCCC TGCCGCGCAACCAGCTGTACCTGGTGTACCAGCCACAGATCAGCTACCGCGACCACCGCGTGGTCGGCGTCGAGGCGCTGCTGCGCTGGCAGCACCCGGA GCTGGGCATGGTCCCGCCGGACCAGTTCATTCCGCTGGCCGAACAGAACGGCAGCATCATCAGCATCGGCGAATGGGTACTGGACCAGGCCTGCCGGCAA CTGCGCGAATGGCACGACCAAGGCTTCAGCGAGCTGCGCATGGCGGTCAACCTGTCCACCGTGCAGCTGCACCACAGCGAACTGCCGCGGGTGGTCAACA ACCTGCTGCAGGCCTACCGCCTGCCGCCACGCAGCCTGGAGCTGGAAGTGACCGAGACCGGCCTGATGGAAGACATCAGCACGGCCGCCCAGCACCTGCT GAGCCTGCGCCGCTCCGGGGCGTTGATTGCCATCGACGACTTCGGCACAGGCTATTCGTCGCTCAGCTACCTGAAATCACTGCCGCTGGACAAGATCAAG ATCGACAAGAGCTTCGTTCAGGACCTGCTCGACGACGATGACGACGCCACCATCGTTCGGGCCATCATCCAGCTGGGCAAGAGCCTGGGCATGCAGGTGA TTGCCGAAGGGGTGGAAACCGCCGAACAGGAAACCTACATCGTTGCCCAGGGCTGCCACGAGGGCCAGGGCTATCACTACAGCAAGCCGCTGTCGGCCCG AGAGCTGACCAGTTTCCTCAAGCAGGCGCAGCGGAATCAGGTTTCGATGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGCCTGCCGGGTTACAGGCTGTGACCGGCAATTACATGAATTGCGCGCCCGCCCCTTTACAGCAAATGCAAATCTTTCGCATGATGTTGCGGTTTCG CGTGCCACGGCGCACGGTCCACCCCTTGGTCCAACCACACGATGCAGGAAAACCAATAATGATTCGAATGCCTCTGGCCTCCGCCAGTCTGCTGGCCATT GCCATCGCTCTCGCCGGTTGCGGTGAAAAGGACGACAAAGCCGCCGCGCCGCAAGCCCAGGCACCTGCTGCTGCCGCCAGCACCACCGCTGCTGCGCCAG GGGCTGTCGACGAAGCCGCCGGCAAAGCCGTGGTCAAGCACTACGCCGAAATTGTCTACGCCGTGTACAGCGACTCGCTGAGCACCGCCAAGGCGCTGCA GACCGCAGTCGACGCGTTCCTGGCCAAGCCCAACGACGAAACCCTGAAGGCCGCCAAGGAAGCCTGGGTCGCCGCGCGCGTACCGTACCTGCAGACCGAG
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| Amino Acid Sequence |
>cyclic-di-GMP phosphodiesterase BifA
MKLELRNSLSVKLLRVVLLSALAVGVVLSCAQIVYDTYKTRQAVNNDAQRILDMFRDPSTQAVYSLDREMGMQVMEGLFQDESVRMASIGHPNETMLAEK SRPLQDMSMRWLTDPILGQERTYTTQLVGRGPYSEYYGDLSITLDTSSYGEDFLINAVIIFISGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLTQINPD RPSQHQIPLLKGHEKNELGLWVNTANQLLASIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQHRVAVLCVGLDDFKGINEQFS YQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLEVPFDLDHHQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTL AKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQ LREWHDQGFSELRMAVNLSTVQLHHSELPRVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIK IDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVAQGCHEGQGYHYSKPLSARELTSFLKQAQRNQVSML
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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