Pseudomonas putida NBRC 14164, PP4_03500 (soxB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NBRC 14164 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCCGGGCGCCCAAGGCGGCCCGCTGATGCACGTGATTGCCGCCAAGGCCGTGTGCTTCAAGGAAGCGCTGGAGCCTGGCTTCAAGGCCTACCAGCAGCA AGTGATCGAAAACGCCCAGGCCATGGCCCAGGTGTTCATCGACCGCGGCTACGACGTGGTGTCCGGTGGCACCGACAACCACCTGTTCCTGGTCAGCCTG ATCCGCCAGGGCCTCACCGGCAAAGATGCCGACGCCGCCCTGGGCCGCGCGCACATCACCGTCAACAAGAACGCCGTGCCGAACGACCCGCAGTCGCCGT TCGTCACCTCGGGCCTGCGCATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTTGCGCAGTGCGTGGCCCTGGCCGGCTGGATCTGCGACATCCT CGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCGCTGTGCGCAGACTTCCCTGTTTACCGCTGAGTGGAGTAAACGACC
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| DNA Sequence for Gene |
>PP4_03500
|soxB
ATGCAACGCTACTCGGGCTTCGGCCTCTTCAAACACTCCCTCAGCCACCACGAAAACTGGCAGCGCATGTGGCGCACGCCAACCCCTAAAAAGGTTTACG ACGTGGTTATCGTCGGCGGTGGCGGCCATGGCCTGGCCACGGCCTACTACCTGGCCAAAGAGCACGGCATCACCAACGTTGCCGTGATCGAGAAAGGTTA CCTGGGCGGCGGCAACACCGCCCGTAACACCACCATTGTGCGTTCCAACTACTTGTGGGACGAGTCGGCGCAGCTGTACGAGCACGCCATGAAGCTGTGG GAAGGCTTGTCCCAGGACATCAACTACAACGTCATGTTCTCCCAGCGCGGCGTGTACAACCTGTGCCACACCCTGCAGGACATTCGTGACTCCGAGCGCC GCGTCAGCGCCAACCGCCTCAACGGTGTCGATGGCGAGCTGCTGAACACCGCCCAGGTCGCGGCCGAAATCCCGTACCTGGACTGCTCGAAGAACACCCG TTACCCGATCCTTGGCGCAACCGTTCAGCGCCGTGGTGGCGTGGCCCGCCACGACGCCGTGGCCTGGGGCTATGCCCGCGCTGCCGACGCCCTGGGCGTG GACCTGATCCAGCAGACCGAAGTGATCGGCTTCCGCAAGGAAAACGGCGCGGTCATCGGCGTGGAAACCAACAAAGGCTTCATCGGCGCCAAACGCGTCG GCGTGGTCACCGCGGGTAACTCCGGGCACATGGCCAAGCTGGCCGGTTTCCGCCTGCCGCTGGAATCGCACCCGCTGCAAGCGCTGGTATCCGAGCCGAT CAAGCCGATCATCGACAGCGTGATCATGTCCAACGCCGTGCACGGCTACATCAGCCAGTCCGACAAGGGCGACCTGGTAATCGGTGCCGGTATCGACGGC TGGGTCGGCTACGGCCAGCGCGGTTCGTACCCGGTGATCGAGCACACCCTGCAGGCCATCGTGGAGATGTTCCCCAACCTCTCTCGCGTGCGCATGAACC GCCAGTGGGGCGGCATCGTCGACACCTCGCCGGACGCCTGCCCGATCATCACCAAGACCCCGGTCAAGAACATGTTCTTCAACTGCGGTTGGGGCACTGG CGGCTTCAAGGCGACCCCGGGTTCGGGCAACGTCTTCGCCGCGAGCCTGGCCAAGGGCGAAATGCACCCACTGGCCGCGCCGTTCTCCATGGACCGTTTC TACAACGGCGCACTGATCGACGAACACGGCGCCGCCGCCGTCGCCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGGAGACACCGTCATGTTGCATATTTTCTGTCCCCACTGCGGCGAGCTGCGCTCCGAAGAAGAGTTCCACGCCTCTGGCCAGGCGCACATCGCCCGCCC GCTGGACCCTGCCGCCTGCTCCGACGAGGAGTGGGGTACCTACATGTTCTACCGTGATAACCCACGCGGTATTCACCATGAACTGTGGGACCACGTTGCC GGTTGCCGCCAGTACTTCAACGTCACCCGCGACACCGTGACCTACGAAATTCTGGAAACCTACAAGATTGGCGAAAAGCCGCAAGTGACCGCCAACGGTA AAGCTGCGAACGCACCGTCGACCGTCAAAGGCCAAGGGGAAAAAGTATGAGCCAGACCTATCGCCTCGCCAGCGGCGGCCGCATCGACCGCAGCAAGGTC CTGAACTTCACTTTCAACGGCAAGACCTACCAGGGTTATGCCGGTGACAGCCTGGCCGCCGCACTGCTGGCCAACGGCGTAGACATTGTCGGCCGCAGCT
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| Amino Acid Sequence |
>sarcosine oxidase beta subunit
MQRYSGFGLFKHSLSHHENWQRMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVIEKGYLGGGNTARNTTIVRSNYLWDESAQLYEHAMKLW EGLSQDINYNVMFSQRGVYNLCHTLQDIRDSERRVSANRLNGVDGELLNTAQVAAEIPYLDCSKNTRYPILGATVQRRGGVARHDAVAWGYARAADALGV DLIQQTEVIGFRKENGAVIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPLESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG WVGYGQRGSYPVIEHTLQAIVEMFPNLSRVRMNRQWGGIVDTSPDACPIITKTPVKNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAAPFSMDRF YNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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