Pseudomonas aeruginosa MRSN18971, CH80_RS07875

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain MRSN18971 scaffold00002, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCATTCTCGATTTCGGCAGCGACATCAAAGGCGACAGCCTGCTCGTCGGCTACGAAAACAAGATCGAAATCATGTCCTACAGCCACAACGTGGCGATGCA GGTCACCAACGACGTCAGCAACTCGGAACGCACCTCCGGCAAACCCCACGTCGGCGAATTCACCCTCACCAAGTTCATCGACACCTCGACCCCGACCCTC AACGAGTATTGCTGCGCCGGCAAGCCGATCGCCGAGGCGACCATCACCATCGGCCGCAACGCCGCCGAGGGCAACGGGCAGATCATGCCCTTCATCGTCT ACACCCTGAACAACGTGGTGCTCTCCAACGTCAGCGTCAGCGGCGGCGCCGGCGGCAAGCCGGTGGAAACCCTGTCGCTGAACTTCACCAAGATCAAGTG GGAGCTGACCGCGCAGAAGGACGACGGCACCAAGGAAGGCACGGCTGCCTCGACCTGGGACCTGGCCGCCAACCAGCTGGTCAAGTGACCGGGCGCCGAC
DNA Sequence for Gene
>CH80_RS07875
ATGTCCGGAGCCCTGCCGCCACTGTTCGAGCGCCTCAGCGCCGAGGCCGACGAACGTCCAGCGTTCGACGACCGGGCGCTGGCCGAGTCGGTCCGCGGCG AGCTGCTGCGCCTGCTCAATACACGGCGTCCGGCGAATGCGCGCAGCGGCATCCTCGCCTATGGGCTCGCCGACTGGACCGCCGTGCAACGCCTGCGCGC CGAAGACCGGCGCCAGCTGGCGCGCGAGGTGCGGGTGGCGGTCGAGCATTTCGAGCCGCGCCTGCAACTGGCCGAGGTCGAGGTCGAACCTGACCCGGGC AATCCGCAGCGCCTGCGTATCCAGCTCGGCGGCAGCCTGCGCAGCGGGTCGCGCCTGACGCCTGCGCTGTTCGTCATCGAACAGGGCAACGATGGCCTCG AGGTGCGCCATGAGCGATTCGATTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGCCGACCTGCTCGACTACTACCAGCGCGAGCTGACCTGGCTACGGCACGCCGGCGGCGCCTTCGCCGAGCGCTATCCGAAGGTCGCCCGGCGCCTGCAA CTGGCCCCCGGCGAATGCCCCGACCCGCACGTCGAGCGTCTGCTGGAAGGCTTCTCGCTGCTCACCGCGCGCCTGCAACGGCGCCTCGACGACGACTACG CGGAGTTCAGCGACGCCCTCCTCGAACAGCTCTACCCGCTGGCGCTGCGCCCGCTGCCGTCCTGCGCGATCGTCCAGTTCGAACCGGACCCGACCCAGGG CAACCTCGCCGAGGGCTACCGGCTGCCGCGCGACACCGCGCTGTTCGTCACCACCCGCGGCGGCGACAGCGTGCATTTCCGCAGCAGCGCCGAGGCGACC CTGTGGCCGCTGGCGATCGACGAAGCGAACCTGCTCGGCGGCGAGGAGGCGCAAGCCCTGACCGGAGTCGGCGCCGCCCGCTCGGCGTTGCGCCTGAGCC
Amino Acid Sequence
>type VI secretion protein
MSGALPPLFERLSAEADERPAFDDRALAESVRGELLRLLNTRRPANARSGILAYGLADWTAVQRLRAEDRRQLAREVRVAVEHFEPRLQLAEVEVEPDPG NPQRLRIQLGGSLRSGSRLTPALFVIEQGNDGLEVRHERFD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site