Pseudomonas aeruginosa AZPAE14842, NR60_RS30335
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14842 AZPAE14842_contig_44, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGACCGCAGCCTGGAACGCGGCGCCGACCAGGTGATCGCCTGGAGCCTGTACTCGGGCGACCAGGAAAGCCGGTTCCCCGGCGCGCAGGACAAGGGCC TGACCTGGAATGTCGGCGATCCGCTGAAAATCATGCTGCGCTGGGCGAAGAACGGTTCGCAGCGTCCGGCAGACGACCCGCGCCAGGCCAGCCTGGCGGT GGCCGACCTCGAGGCCGGCTGGAGCTACCAGGGCTCCTGGGCGCTGCTACGCATGATGCGCGCGCACTTCTCCCGGCAGCGCCCGCCGAACGTCGACTAC ACGGAGTTTCCGCTGGTCCTGCAACTGCCGGTGTATGCGCCCTACAGCCCGGAAAACGAGGCGCGGATGTTCCTCCGCCTGTCGTTGATGAGCCTGGGCG GCAAGACCCCGCTGTCCATCCAGCCGCTGCCGGTGCGCGCGCCGCAATCGCCGTTCGCGACGCTGTTGCCGGCCACCGTCGCCAGCACCGGAGGTATCCC
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| DNA Sequence for Gene |
>NR60_RS30335
ATGACCCTGCCTCTTTCCGGCAACGCCCTGTCCCTGGAAGTGCTGCTCGAACCGATCGACCCCGGACAGCCGTGTGGCCCCAGCCTGCGCTACGACCCGG ACTACGACCGCCTGCGCGAGTTGCGCCGGGAGGACGACAGCAGCCTGCCGACCGGCGTCTGGCAGGCGGAGGCCAAGCGCGCCGACTGGGCCGCGGTGGA GCAGTTGGCCAGCGAACTGTTGCAGCGGCGCAGCAAGGACCTGATGCTCGCCGCCTGGCTCGGCGAGGCCTGGCTGCAACGCGGCGGGCTGGGCGGATTG CAGCGCGCGCTGGTGCTGCTGGCGGAACTCTGCGAGCGCTACCCCGAGGAGGTGCATCCGCAAGCCCAGGACGGCGATCAGTCGTGGCGGGTGCCGCCCA TCGACTGGCTGTTGCGCCGCTATGCCGAGCTGCTGCACACGCGCCTGCCGCTGATGGGGCAGGGCGCCTTCGCCGAGATCACCCTCTATGCCTGGCAGAG GTTGCAGCGCCAGCAGGTCGCCAGCGGCGACAGCAAGAGCGCCAAGGCGGCGCTGGAAGCGGCGCAACTTCAGCAGAAGAAGCTCGACGAAGCGTTGCGC GCGGAGCCCCTGGTGCAATGGCAGCGCAAGCAGGCCAGCCTGCTCGCCTGCCAGCAGCAACTGCAACGCCTGGAACAGTGGTGCGACCGCTGCCTGGGCG AACTCGCCCCCAGTTGCCAGCCGCTGCGCGAGGTCATCGCGCAATGGCTGGCCTTGCTCAAGGAGTTCATCGCCATGCACCCGCAAGCGCCGCTGCCCGA AGAACAGCCACCGGTCGCGGAGGCGGACGCCGCCGAAGGCGACGCGGACGGCGAGGAAAGCGTCCCGGCGAGCGCGCCGAGCGGGCCGGCTGGCGCGCCG ACCAGTCGCGAGGACGCCTATCGGCAACTGCTGCTGATCGCCGACTACCTGGCGCGCACCGAGCCGCACAGCCCGGTTCCCTACCTGATCAAGCGCGCGG TGGAATGGGGCAACAAGCCGCTGAGCGAGCTGCTGGCGGAGCTGATCAATGCGGACTCGGAGGCGCGCCGGGTCTGGTCGCTGCTTGGCGTACTGCCCTA A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGCGGGGTTATATTTTTTATTCGAATATATAAATACGAATTCAGAATTTTTTAATCTATGGGTTCCTGGGGCAAGATGGGCGCACATTCCCCGGCTCG GAACCCTGCATGTCCGTCATCACCCATCCCCACGCCCGCGAGCTGACCAAATCGGTGCGCGCCACCGTGCTGGTGTTCAACGACCCCCGTTCCCGCGAGC TGCTGGAGCGCATCGAGCGCCTGGCGCCCAGCGAGGCCAACGCGCTGGTCATCGGCGAGACCGGCACCGGTAAGGAGCTGGTGGCGCGCCATATCCATGC CCTCAGCGGACGCAGCGGCGGCCCGTTCGTCGCGGTCAACTGCGGTGCTTTCGCCGAGAGCCTGGTGGAGAGCGAGCTGTTCGGCCACGAGAAGGGCGCC TTTACCGGTGCGTTGCAGAGCAAGGCCGGCTGGTTCGAGGCGGCCAACGGCGGCACCTTGTTCCTCGACGAGATCGGCGACCTGCCGCCGAGCATCCAGG
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| Amino Acid Sequence |
>type VI secretion protein
MTLPLSGNALSLEVLLEPIDPGQPCGPSLRYDPDYDRLRELRREDDSSLPTGVWQAEAKRADWAAVEQLASELLQRRSKDLMLAAWLGEAWLQRGGLGGL QRALVLLAELCERYPEEVHPQAQDGDQSWRVPPIDWLLRRYAELLHTRLPLMGQGAFAEITLYAWQRLQRQQVASGDSKSAKAALEAAQLQQKKLDEALR AEPLVQWQRKQASLLACQQQLQRLEQWCDRCLGELAPSCQPLREVIAQWLALLKEFIAMHPQAPLPEEQPPVAEADAAEGDADGEESVPASAPSGPAGAP TSREDAYRQLLLIADYLARTEPHSPVPYLIKRAVEWGNKPLSELLAELINADSEARRVWSLLGVLP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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