Pseudomonas aeruginosa AZPAE14842, NR60_RS18280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE14842 AZPAE14842_contig_20, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGCAGAAGCTCGAGGACGAGGACGACGGCAGCGTCTACTACACGCGTATCGCCTGCAAGCTGCTCGACCTGCAAAGCTGCCGCTGCACCAACTACGCCG AGCGCATCCGTTTCGTCCCCGACTGCATCCAGCTCACCCCGGCGCAGGCCGACGAGTTCCAGTGGTTGCCGCCGACCTGCGGCTATCGCCTGGTTGCCGA AGGCAAGGACCTGCCGCTCTGGCACCACCTGGTCTGCGGCGACCCGGAGCGGGTCCACAAGGAACGCATTTCCCAGTCCGGGCGCATGCTCAGCGAGACC CAGGTGGCCGAGGACGACTGGGAGGACTACCTGATCTTCCGCGCCGGCTGAGCTCGCGTCCGTCGCACTTCCTTACCTTGTGAAATGATATGTATTATCA TTCGCATATTTGCGAAGGGACTTCCGTATCCGACGGAAGCGGGGAGGCGAGGTGTTGCAGCGGGTCAACGGCGCGGGGGGCGCCGCCGGAGGATGCACGG
DNA Sequence for Gene
>NR60_RS18280
ATGGATGAGCGCTTCCGTGGTTCCGTCTCGCATGCCTATCAGGCGTTCCATGGCGAGTTGCTGCGCTTCCTGCGCAAGCACCTGGGCAGTTCGGCGGACG CCGCCGACCTCGCCCAGGATACTTTCGCCCAGTGGCTGAAATGGCCGGGCCGGCAATCGGTCGAGCAGCCGCGCGCATTTCTTTTCCAGATCGCCCGCAA CTTGTTGCGCGACCATTGGCGCCGGCAGCAGAGCCGCGGCCAGGATCTCGACCGGCCGGCGGCGAACGACGAACCCGCCGCGCTGGAAGGCGAGGCGGCC GGGCCGGGCGAGCGTTTCGAACAGCAGCAGCGCCTCAGCCACCTGGCGGCCGCGCTGGCCGAGCTGCCGCCGCGGCGGCGCGAAGCGTTCGTCCTGCACA AGTTCGACGGCCTGTCCCAGGTCGAAGTGGCCGAGCGCATGGGAATCTCCCTGAGCATGGTGGAAAAGCACATCGCCAGCGCCTTGCTGCACTGCAAGCG GCGGCTTGGCCAGGGAGGCGAAGGATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGCCGCTGGAACGACTGGAACCGCTGTTCGCCGACGAAACCGAAGAGGACATCGATCACCGCGCCGCCTACTGGTTCAGCCGGCGTCGTTCCGGGCATTT CAGCGCTGCCTGCCGGGCCGAGCTGGAGGATTGGCTATGCGCCGATCCGCGCCATCGCGAAGCGCTCGAGGGCATGGAGCGGCTCTGGCGCGAATTCGAC GGCCTGCCGCGCCCGGCGCTGGACGATATTCCCGAACCGGTGCCGGCCTGGCGCCTGCCCCGGGCGCTGGCGGCGGCGTTCTTCGTGTTCTGCGCGCTGC TCGTCGCCACCCTGTTCTGGCGCGACCAGTCGCTCGGGCCGAACCTCGCCTACGGCACGGCGCCTGGCGAGCAGCGCGAGGTGGTCCTGGCGGACGGCTC GAAGCTGTTCCTCGACGTCGATACCCAAGTGCAGGTGCGTTACGCCGAGCGCACCCGCGACGTGCTGTTGAAGAAAGGCGAGGTGTTCTTCGTGGTCAGC
Amino Acid Sequence
>RNA polymerase sigma factor
MDERFRGSVSHAYQAFHGELLRFLRKHLGSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDHWRRQQSRGQDLDRPAANDEPAALEGEAA GPGERFEQQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQGGEG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site