Strain | Pseudomonas aeruginosa strain AZPAE14847 AZPAE14847_contig_9, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCTGCTGCGGCTCGGCGAGCGCCACGACATCGCCCTGCGCCGCGACCTGTTCCGCTACTACCACAGCGACGCGCAGTCGGCGATCGCCGCCGGCCACGAC ACCCGCGCCGCGCTGCTGGCGTTCGGCTGCGACGCCACCCACGGCTACGAGCGCACGCACATCGACAGTCTCGCCGCGCTGAGCCGGCTGCTCACCGCCT ACATCCTCAGCCCGCCGGTCTTCGCCAGCGACGCCAAGCCCCGGGAAACCTCGCTGGAACGCTTCAACAAGCAGCTCGAGCATCCGGTGCACATGGAAAG CTGCACCCACGTCCCGCCGGTGGACGAAGTGCTCGACAGCAGCAACAACAGCGACAAGGACTGAACCCGCGCCGGCCTCCCCGCCCCCGGGGAGGCCGCC CTCCTCTCCAGCCAACTGCTAGGCTGATGGCAGGTTCCCTCGCCTGTCTCGTTTCCTCCGTAGCATCATGCGTGCCGACTCGTGTCCATGGAGTAGTTGC
|
|
DNA Sequence for Gene |
>NR65_RS09705
ATGTCTCGACTCTGCCTGGTCCTGCTGTTGCTCTGCTGCGCGCTGCCGGCCCAGGCGCAGCCGCCCGCGCCGCTGGACGGAGAGGACCTGCGCCTGTCCC TGGGCGCATACGCCGAGTACTACCGCGACGCCGGCGGCAAGGCGCGCCTGGGCGACATCCTCGCCTTGCCGGCGCAGGCCTTCGCCGCCCTGCGCGGCGA CCACGCGAACTTCGGCAAGAACGCCGCAGCCTGGTGGTTCAGGGTGCGCCTGGACAACCGCAACGGCACCGACCTGGCCGGTTTCCTGGAGATCAACTAC CCGCTGCTGGACGACCTCAAGGTCTACCTGCTGACCGCCGATGGGCGCATCGAACAGCAGGAGAGCGGCGACCTGTTCGCCTTCTCCCAGCGCCCGGTGC AAGTGCGCAACTTCTGGTTCCCGCTGCGACTGCCGCCCGGCGAGAGCACCCTGCTGCTGCGCGTGCAGAGCACCAGCACCGTCTACGTGCCGCTGTACTT CAGCACCTACGCGGCCAGCGCGGCCAGCCAGGAAACCCTGATGGGCTTCAACGGGGCCTTCTACGGGGTGCTGTTCGGGTTGTTCTGCTACAACCTGTTC CTCTTCGTCTCGCTACGCGAGGCCACCTATGCCTGGTACCTGCTGTACAACCTCAGCCTCGGCCTGTTTTCCGCCAGCTTCGACGGCCTGCTGTTCAAGT TGCTGCCCGGACACGTGGCGCTGGAGTCGGCCGGCATCTACCTGCTGATGTACCTGAGCTGCCTGGTGTCGATCCAGTTCAGCCGCGGCTACCTCTACAC CCGCCGCGACTTCCCGCGCCTCGACCGCTTCCTCCGCGGCCTGCTGCTGGCCTGCGTGGTCCTGTTGGCCAGCGAGCCGCTGGTGGGGCTGCGCGCCTGG AACGTCCTCGCCAGCCTGACGGTGATGCTGGTATCCCTCAGCCTGCTGCTGGCCGGCGTCCACGTCTGGCGCCAGGGCCTGCGCTACGGCCTCTACTACA TCCTGGCCTGGGGCGCGCTGCTGCTGTCGTTCCTGGTCACCACCGCCGCCTCGCTGGGCTTCGAACTGTTCGGCCTGTTCGGCAGCAGCGTGGTCAAGAT CGGCATGACCGTGGAACTGGTGACCCTGTCCATCGGCCTCGCCGACCGCATCAATGCGCTCAAGGAGGAAGGCTTCCGCTCGCGCCAGGCGGCCGAGCAG GCGCGGGTGGAGAACGAGGCGAAGAGCCGCTTCCTGGCGAAGATGAGCCATGAGATTCGCACCCCGCTGAACGGCGTGCTGGGCATGCTGCAACTGCTCC GCGACACCCCGCTGGACCGCGGCCAGGCGGCCTACGTGGAGACCATCGCCAGCTCCGGCAGCGCGCTGATGTCGGTGATCAACGATATCCTCGACTACGC TCGCATCGAGTCCGGCAAGCTGCACCTGGAGCGCATCGACTTCGACCTTGAGGAGCTGCTCTCCGACACCCTGGCGCTGTTCAGCGCCCAGGCCGTGGAA AAACGCCTGCGCCTGCATCTCGGCCTGGACAGGGGCGTGCCGCGCCGCCTCAACGGCGACCCGACGCGGTTACGCCAGGTACTGATGAACCTGCTCAGCA ATGCCCTCAAGTTCACCGCCGAAGGCCATGTCGCCGTGCGCGTGCAGCGGCGCTTCGACGAGGGCGGACGCGAGCGCCTGCTGTACAGCGTCAGCGACAG CGGCATCGGGATATCCGCCCAGGCGCAGAAGACCCTGTTCGAATCCTTCTCCCAGGCCGACTCCAGCACCACCCGCCGCTACGGCGGCAGCGGCCTGGGC CTGGCGATCAGCCGCGAGCTGGTGCAGATGATGGGCGGGCGCATCGAGGTGAGCAGCGAGCCGGGCAAGGGCACCCGGTTCAGCGTCGACCTGCCGCTCA GCCCCGCCCTCGACGCCGGCGAAGCGGACGAACTGGCGCAACTGCTGCAACACCGCCCGGCCCTGCTGGCCAGCGAGGACAACCTGACCCTGGACTGCCT GCAGGCATTGCTGGAGCGTTGGGGACTGCGGGTCGAACGCTGCCTGCAGCCGAGACGGCTGAACGCCTACCTGGAGGACTTCAGCGCACCGCCCCTGCTG GTCCTGGCGGCGCCCTGGCCGGGGCCGCCGTCGATCTGGCTGGACACCCTCTATGCGCAACTGGAGCAAGGCCAGCGCATCCTCCTGCTATGCCCGCCGC AGCACTGCCAGGACCTGCCGCCGCACGAAGGCCTGCGCCTGCTGGCCCTGGCCCAGCCGGTGGCGGTGAAGGCCCTGCGCGAAGCCCTGCTGGAACTGTA CCGGGAGCGGCGCCGACAGCCAGGGCGGAGCAGCGAGGCGGCCCCGGACGAACGCCTGGACGCCCCATGCATCCTGGTCGCCGAGGACAACCCGGTGAAC CAGCTGGTGGTGCGCGGCTTCCTCGCCAAGCGCGGCTACGCGGTGCGCCTGGCCGGCAACGGACGGCTCGCGCTGGACGAGTACCTGCGCGATCCGAACG GCATCCAGTTGATCCTGATGGATGGCGAGATGCCGGAAATGGACGGCTTCGAGGCGACCCGCCTGATCCGCCGGGAGGAGCGTGCCCAGGGCTGGCCACG CGTACCGATCGTCGCCCTGACCGCGCACATCCTCGACGAACACCGCCGGGCCGGAATCGAGGCTGGCATGGACGCCTACCTCGGCAAGCCGGTGGACCGG GCGGAACTCTATGCCACCCTCGAACGCCTACTCGGCCAGCCTTCGCGACAGGCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
CAGTGCGCGATGCGTCGCGCTAGCATTCGCCGCCATCCCGGAGTACCGCCAATGCTGATCCCCCACGACCTGCTCGAAGCCGACACCCTGAACAACCTGC TGGAAGACTTCGTCACCCGCGAAGGCACCGACAATGGCGACGAGACCCCGCTGGACGTGCGTGTAGAACGCGCCCGGCATGCCTTGCGGCGGGGCGAGGC GGTGATCCTGTTCGACCCGGAGAGCCAGCAGTGCCAGTTGATGTTGCGCAGCGAGGTGCCTGCGGAGCTGTTGCGCGACTGAGTCTCGGCATCGCCCCGC CTGGCGGGGCGGGTTCGCCGCCCTGCACACCCCGGAAACGCCGGACAGCGCCCCCGCTCCGTAGGGCGAATAACCGCTCGCGGTTATCCGCCGCTTATCC GCGACATCGGCGGATAACGCCCATGGCGTTATTCGCCCTGCACACCCCGGAAACGCCGGACAGCGTCCCCGCTCCGTAGGGCGAATAACCGCTCGCGGTT
|
|
Amino Acid Sequence |
>putative sensor/response regulator hybrid
MSRLCLVLLLLCCALPAQAQPPAPLDGEDLRLSLGAYAEYYRDAGGKARLGDILALPAQAFAALRGDHANFGKNAAAWWFRVRLDNRNGTDLAGFLEINY PLLDDLKVYLLTADGRIEQQESGDLFAFSQRPVQVRNFWFPLRLPPGESTLLLRVQSTSTVYVPLYFSTYAASAASQETLMGFNGAFYGVLFGLFCYNLF LFVSLREATYAWYLLYNLSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRFLRGLLLACVVLLASEPLVGLRAW NVLASLTVMLVSLSLLLAGVHVWRQGLRYGLYYILAWGALLLSFLVTTAASLGFELFGLFGSSVVKIGMTVELVTLSIGLADRINALKEEGFRSRQAAEQ ARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLG LAISRELVQMMGGRIEVSSEPGKGTRFSVDLPLSPALDAGEADELAQLLQHRPALLASEDNLTLDCLQALLERWGLRVERCLQPRRLNAYLEDFSAPPLL VLAAPWPGPPSIWLDTLYAQLEQGQRILLLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILVAEDNPVN QLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILMDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDR AELYATLERLLGQPSRQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|