Pseudomonas aeruginosa AZPAE14880, NR96_RS04010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE14880 AZPAE14880_contig_4, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGCAGGAGATCGAACCCAACGTGGTGGCCGATCCGCCGAAGAAGCCGGACAGCAAGTACGGCAGCCGCCCCATCTGATTTCGCGCCATCCCAAGGCCCGC CTCCCGCAAGGGATGGCGGGCCTTGTGCTATGGCGCCGGTCACTTTGACGGGCATCTCGCCCCGCCGCATCCCGGTTGGCGAGCCGATCTTTCGCCTGTT CAGGCACGGCTGGCGACGGGCCAAGGCCTTTTCCTTTCCGGTGGCAGCGCTACCGTTCCACATCGTCAACCGAAGCTGCTTGCCATCCAGGTGCTCCAAG CGGCGTCCGGGGTTGCCGGAGAGCGAGCTGTAGAGCTTGCTTAAGAATTTTCCTAGCGATTCTTAGGTGGATTCGCGGAGCCGTGTAGGTCCTGTCTTAT GGCTCCTTTCCAGGTGTTCTGAAAAGATTAGCCACCCATCAAGTTCACTCCGGTTCCGGTGGATTTTCCCGGACATGCCGGACACATCGGTTGTCATCCC
DNA Sequence for Gene
>NR96_RS04010
ATGGAGTTCAAGACGTTCCGTCGAACCCTGCTGATCGCGGCAGTCCTGTTCGTTCCCGCCGGCACCAGCATGGCTGCCAATCTGTACGCTTTCGGCGGCC GCGATATCGCCGTCCCCTCGATCCTTCCCGAGGGAAACGTCACGTCGCGCTACACGTTCACTCCCATGCAACTGTGCGGCAAGCCCAGCTGCGATCTCAT CGGCGTCGCTCTGTACAACAAGGGAAGTGTCTGGGACCCGGTCGATGGTCCGGACCTGAATACCAACGTGCCGGGCCTTTCGGTGCGCCTGCTGCTGGAT GGCATACCGGCGAGCAGCCGTTTCAAGGGCACTTTCTCGCAAATCGCGGAGGTCCAGTTGTTCCGCAACTCGACGCCGCTCTCCGACGGCCAGTTCGCGA GCGGAGCGTTCAACTCGTACTTCCTCATTACCTACAAGGACGGGCTTATCGCGTCTGGCACCTCTTCCATCAGGTTGACCGGGAGCGTCACCACGATCAA TGCGACCTGCCAGGTCGCCGACCAGACCGTGAAGCTGCAGTCGATCGCTGCCGCCCGGCTGAACGGCGTCGGCACCTACGCGGCCGTTACCCCGTTCAAT CTCGTAGTGGCCGGCTGTCCTCGCGGGTACAACCGCGTCGGCTACAGCCTTCAAGCGGTGGGGGGCGCGGTGGCCGAAGGCTCGGGTGTATTGCCGCGCC TGGCGGGCAGCACCGCGACCGGCGTATCGATCCGGGTCACCGACGAGGCCGGCGTTCCGCTACGGATGGGACTCTCGTTGCCGGTGACCGCGTACGACAA GAACACCGGCGGGGCTTACTGGATCCCGATGAAAGCGTCCTATGTGCAGACCGCCGAGAAAATCACGCCCGGCTCGGTCCTGGCCGCGATGGTGATCCTG CTCGACTACCAGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGCAGGGGAGGGCAAGAGCGCGCCTCACCCGAACGCCTCGAAAAACGCCAGGGCCCGCGGGTCGCTGGCATAGGCGATGTTGATACGCAGCCAGTCGCTC TCCTCGCCTTCCGGGCTGAAGCCGCTGCCCGGCGACAGCAGCACGTCCAGGCGTGTCGCCACGGCCTGCAATTCGGCGAACGGGTAGTCGCCGATACGGG CCCAGACGAACATCCCGCCGACCGGTTCGGCGAACACCTCCCAGCCGTTGTCCCCAAGCACCCGCAGGGTCGCCGCCATCTGCCGGGTCAGGCGCTGGCG CAGGCGTTGCACCAGCTTGCGGTAACTGCCGTTGGCGAGCATGGTCGAGACCACGCATTCGGCGAAGCGCTGGCTGCCGATGCTGGTGTACATCTTCACA TCCGCCAGGCGCCGGATCAGCTCGGGGCCGGCGATCAGGTAGCCGACCCGTAGCGAGCAACTGAGGGTCTTCGAAAAGCTCGCCAGGTAGATCACCCGGC
Amino Acid Sequence
>fimbrial protein
MEFKTFRRTLLIAAVLFVPAGTSMAANLYAFGGRDIAVPSILPEGNVTSRYTFTPMQLCGKPSCDLIGVALYNKGSVWDPVDGPDLNTNVPGLSVRLLLD GIPASSRFKGTFSQIAEVQLFRNSTPLSDGQFASGAFNSYFLITYKDGLIASGTSSIRLTGSVTTINATCQVADQTVKLQSIAAARLNGVGTYAAVTPFN LVVAGCPRGYNRVGYSLQAVGGAVAEGSGVLPRLAGSTATGVSIRVTDEAGVPLRMGLSLPVTAYDKNTGGAYWIPMKASYVQTAEKITPGSVLAAMVIL LDYQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site