Pseudomonas aeruginosa AZPAE14884, NS00_RS13340
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14884 AZPAE14884_contig_10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATGTCGGGGTTCCGCTGGGGATGGAAAGGGCATCATGGCTGAGGTGGCTTTATTCGTCGAACGATGGCTGGCCCTGCCGGTAGATCGGCCAGGACTTCA TGCGCTGCGGAAACGGCCTGACCAAGTGCAGCGGCTTGCAATCAAAAACGCTGGGCTCGCAATCAGCGTGGTTTTGTCCGGAAGCTCGCGAAGGGGCGGC ATGGATGAATTTTGAAAGTGGGAGTTCGTTAATGAACCGAAGGTATGCGGCTTCCGTGACTGGCAGGGGTAGATGAGGTTTGCGTGCAGAAAATGACCGC TGGATGGGCGCATGCGCAAACGAGGTCGTTTCGTAGAAGGGAATGGCCAAGGATGGGCCTTCTGGGTCATTGGATACGGGATATTGCAGTTTGATTGAAG TGTATTTCCAGTGTATTGGCGCTCATCTGGCAAGGGGTGTTTAAAAAGGCTAATTCGACGTAAATAATCAGCCATGCACTCATGGAAGTAGGAGATACAT
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| DNA Sequence for Gene |
>NS00_RS13340
ATGGCACGACCCATTGCTGACCTTATCCACTTCAACTCTACAACTGTTACGGCAAGCGGAGACGTTTATTACGGCCCTGGGGGAGGTACCGGCATTGGCC CCATTGCCAGACCTATAGAGCACGGCTTGGATTCGTCCACTGAAAATGGCTGGCAAGAGTTTGAAAGTTATGCTGATCTGGGCGTTGACCCCAGACGCTA TGTTCCTCTTCAGGTTAAAGAAAAACGCAGGGAGATCGAGCTTCAGTTCCGAGATGCCGAGAAAAAACTTGAGGCGTCGGTACAAGCCGAGCTGGATAAG GCTGATGCCGCTCTTGGTCCGGCAAAGAATCTTGCACCATTGGACGTCATCAACCGCAGTCTGACCATCGTTGGAAACGCCCTCCAGCAAAAGAATCAAA AACTACTGCTGAATCAGAAGAAGATTACCAGCCTGGGTGCAAAGAATTTCCTTACCCGTACGGCGGAAGAGATCGGTGAACAAGCGGTGCGAGAAGGCAA TATTAACGGACCTGAAGCCTATATGCGCTTCCTCGACAGGGAAATGGAAGGTCTCACGGCAGCTTATAACGTAAAACTCTTCACCGAAGCGATCAGTAGT CTCCAGATCCGCATGAATACGTTGACCGCCGCCAAAGCAAGTATTGAGGCGGCCGCAGCAAACAAGGCGCGTGAACAAGCTGCGGCTGAGGCCAAACGCA AAGCCGAAGAGCAGGCCCGCCAGCAAGCGGCTATAAGAGCTGCCAATACCTATGCCATGCCGGCCAATGGCAGCGTTGTCGCCACCGCCGCAGGCCGGGG TCTGATCCAGGTCGCACAAGGTGCCGCATCCCTTGCTCAAGCGATCTCCGATGCGATTGCCGTCCTGGGCCGGGTCCTGGCTTCAGCACCCTCGGTGATG GCCGTGGGCTTTGCCAGTCTGACCTACTCCTCCCGGACTGCCGAGCAATGGCAGGACCAAACGCCCGATAGCGTTCGTTACGCCCTGGGCATGGATGCCG CTAAATTGGGGCTTCCCCCAAGCGTAAACCTGAACGCGGTTGCAAAAGCAGGTGGTACCGTCGATCTGCCGATGCGACTGACCAACGAGGCACGGGGCAG CACGACGACCCTTTCGGTGGTCAGCACCGATGGTGTGAGCGTTCCGAAAGCCGTTCCGGTCCGGATGGCGGCCTATAACACCGCGACAGGACTGTACGAG GTTACGGTTCCCTCTACGGTCGCAGAAGCACCGCCGCTTATCCTGACCTGGACGCCGGCGAGTCCTCCCGGAAACCAGAACCCTTCGAGTACCACTCCAG TCGTACCGAAGCCGGTGCCGGTATATGAGGGGGTGACCCTCACACCGTTGAAGACCGAGCCGGAGTCCTATCCGGGAGTGCTACTGGACCTAAACGATCT GATCGTGATTTTCCCGGCGGATTCTGGAGTCAAACCTGTTTATGTAATG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCAGTAGTCCTCTTGATAGTGGTATCTTCACACGGAGGCAACTACAGAAAAAATTTGATAGCCACAAATATGATTTTGGGCTGGGTGAAAAAAGCGCCA ACAATGGAACGCTTGCAGAGTTTAGGGATAAAATTCTTGAGCACCTTGCTGATCCTGCAACCGTAGAAAAAGGGACTTACCACTCCGAAGTAAAATCAAA AGTACATTACAATGCCAGGACTAATATTGTTGTTATCATTGGAGAGGATGGGATGTTTGTTTCTGGGTGGAGGATTGAGCCTGGCACGGATCAATACAAT TTTTACATGAAAAATGAGGTGCTTTAAGATGAGCATGGAAATGATAGATATTGCAAAGAAGCTATTAGCCTCATCGATTGACGGGAAAACCTTCAGCGAA GAATTTTTTAAGACTTGGAGGTCCGAGCGCGATTCAGGGGTGCTGGCCCAAGATGATGCATCGCTTGGGAGATGCTTGAGTTTAATGTTTGGTCTGGCCG
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| Amino Acid Sequence |
>Pyocin-S1
MARPIADLIHFNSTTVTASGDVYYGPGGGTGIGPIARPIEHGLDSSTENGWQEFESYADLGVDPRRYVPLQVKEKRREIELQFRDAEKKLEASVQAELDK ADAALGPAKNLAPLDVINRSLTIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRFLDREMEGLTAAYNVKLFTEAISS LQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVM AVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKAGGTVDLPMRLTNEARGSTTTLSVVSTDGVSVPKAVPVRMAAYNTATGLYE VTVPSTVAEAPPLILTWTPASPPGNQNPSSTTPVVPKPVPVYEGVTLTPLKTEPESYPGVLLDLNDLIVIFPADSGVKPVYVM
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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