Pseudomonas aeruginosa AZPAE15025, NT41_RS05105

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043023 ribosomal large subunit binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF016821
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0034605 cellular response to heat
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF016821
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00363
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF016821
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003727 single-stranded RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF016821
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.10.290.10 - IPR036986 RNA-binding S4 domain superfamily 1 108 6.8E-39
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 9 54 1.1E-9
CDD cd00165 S4 - - 9 58 2.46805E-9
MobiDBLite mobidb-lite consensus disorder prediction - - 87 131 -
SMART SM00363 s4_6 IPR002942 RNA-binding S4 domain 9 72 5.9E-6
PIRSF PIRSF016821 HSP15 IPR025708 Heat shock protein 15 6 131 2.2E-38
SUPERFAMILY SSF55174 Alpha-L RNA-binding motif - - 8 103 1.81E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.