Pseudomonas aeruginosa AZPAE15025, NT41_RS28000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE15025 AZPAE15025_contig_37, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAAGCACAGTCATGTCGGTCCCGCTCATGCATCGACCAGCTTCAACGCCTGGGATTCGACACCGTTCGATGACCGGTATGTCCTGCGCGACGAGGCCA CGCTGGAGCCGTTACCCAATACCGCCGTTGAAGTGATACGAGGCGATGGTGGTGTGGTGAAACTGATGACCGACAGCCAGGGCCGTTTACCCAAGCAACA ACACCTGGCCGTGGACCCGGTGCAGATACGCATCCTGGGCAAGGGCAGTCACAACAGCGACACGGAGTCCAACAC
|
|
| DNA Sequence for Gene |
>NT41_RS28000
ATGAGCAGCGAACCGCTCGAGCCGAATCAGGATGTGATCATCCCTCGCTCTCGCGACAGTCTGGGACGGCCTGTCTACAAGGCTCAGTTGACCCGTACCG ACAACCAGAGCGAAAAGGTGGCACTGGTTCGGCAGACCGCTCCCCTGCCGGTGATCTTCATTCCGGGGATCATGGGAACCAACCTGCGCAACAAGGCAGA CAAGAGCAAGGTCTGGAGGCCGCCGAACGGTCTCTGGCCCATGGATGACCTGTTTGCCTCAATCGGTGCGTTATGGACCTGGTATTGGCGAGATGCAAAG GCTCGTCAAAGATTGCTGAAAGCGGAGAGAGTGGAAGTCGATGACCAGGGTACGATCGATGTCGGTCAATCTGGTTTGTCCGAAGAAGCTGCCCGCCTGC GCGGCTGGGGCAAGGTCATGCGCAGTGCGTATAACCCGGTCATGGGTTTAATGGAGAGGCGACTGGATAACATCGTCAGCCGCCGGGAACTCCAGGCATG GTGGAATGACGAAGCCCTCTCTCCTCCTGGAGATCAGGGTGAGGAGCAGGGAAAAGTTGCGCCGATCGATGAAGAGGAATTGCTCAAGGCCAGCCGATAC CAGTTCGATGTCTGGTGCGCCGGTTATAACTGGCTACAGTCCAACCGGCAATCGGCGCTGGATGTACGCGACTACATCGAGAACACGGTGTTGCCTTTCT ACCAGAAGGAGTATGGTCTCGATCCCGGGCAAGTGAGTCGTATGAAAGTCATTCTGGTCACCCACTCGATGGGAGGGCTGGTGGCGCGGGCCTTGACGCA GTTGCACGGCTATGAGCGCGTATTGGGGGTGGTACATGGCGTACAACCTGCGACGGGTTCCTCAACCATCTACCATCATATGCGCTGTGGCTATGAAGGT ATCGCACAGGTCGTGCTGGGACGAAATGCCGGTGAAGTGACAGCCGTTGTCGCCAATTCGGCCGGCGCGCTGGAGTTGGCCCCTAGCGCCGAATACCGGG AAGGACGTCCCTGGCTGTTTCTGTGCGACGCGCAGGGGCAGGTGCTCAAGGATATCGATGGAAAGCCTCGGGCTTATCCGCAGAATCAGGACCCTTATGA AGAGATATACAAGAGCTCTACGTGGTATGGATTGGTGCCTGAGCAAAATGCACAATATCTGGACATGTCAGACAAAAAAGAAAGTTTAAGAGTTGGCCCC CGTGATAACTTTGAAGACTTGATAGATAGCATTGCTAAGTTTCATGGTGAATTGTCAGCAGCAGGCTATCACTCAGAGACCTATGCCCATTACGGAGCTG ACGATAGCCGCCATAGTTGGCGCGACCTGATCTGGAAGGGTGACCCTACCCCTCTGGAGACCCCTGGTGCCACACTCAACGACGATGAGAACGGCACTTA CAACAGTTGGTTCCGCCGGGGCTTGCCCACCATAGTGCAGGGTCCGCTGGAGACGGGAAATCCTCTGGACGCTTCCGGTAGCGGAGGTGACGAAACGGTA CCGACCGACTCCGGCCAGGCGCCTGCCCTGGCGGGCGTCAAGGCCAGCTTTCGGCATGGCAGCAAGGGCAAGGGACAGGCCAATACAAAACGGGGCTATG AGCACCAGGAGAGTTACAACGATGCTCGTGCTCAATGGGCAGCGCTATATGGGGTGATCAAAATCACCCAGTTGGCGGATTGGCATCCTAATGACAAAGG AGGGACATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGCATCCCCGTCGGTTGCTTGCTGTACTTGGGTTGGTGGTCTTGACCAGCATGACCAGTTGCACTTCGTTTTCTTCTTCTCGGAGCTCTTCCATGGACAA GACCGGATGGATCACTCATTGCTTTGGTCGCTTTCTGATTGATCTGCCACCTGACGCGGTAGTCAATGCCGGATACTACCTATGGGGAGACAGAATTGAG TACTTAGATGATAAACCTACCGAACTGGCAGCCAGGGTTGATCGTCTTGAAAAAGAGTGGAGGACTCAGAAGCATAAATCCAAAGGTAACATGTTTCTTC GTAAAATTGACTTTGGCAATGAATCAGTAGGTTTATTGTCTTGGTCTTCAGAGGTTGCCTCTAAAACCTATTTATTGGATACCTATGTTACATCTAAGCC TACGTGGCATGCCTATCGTTGGAAAGGGAAAGTTTCGGTAGACAGAGAGCAACGTGCTGTAGAGATGTCTAGGACTTTAGCTCGAAATCTACGCTCGCGC
|
|
| Amino Acid Sequence |
>membrane protein
MSSEPLEPNQDVIIPRSRDSLGRPVYKAQLTRTDNQSEKVALVRQTAPLPVIFIPGIMGTNLRNKADKSKVWRPPNGLWPMDDLFASIGALWTWYWRDAK ARQRLLKAERVEVDDQGTIDVGQSGLSEEAARLRGWGKVMRSAYNPVMGLMERRLDNIVSRRELQAWWNDEALSPPGDQGEEQGKVAPIDEEELLKASRY QFDVWCAGYNWLQSNRQSALDVRDYIENTVLPFYQKEYGLDPGQVSRMKVILVTHSMGGLVARALTQLHGYERVLGVVHGVQPATGSSTIYHHMRCGYEG IAQVVLGRNAGEVTAVVANSAGALELAPSAEYREGRPWLFLCDAQGQVLKDIDGKPRAYPQNQDPYEEIYKSSTWYGLVPEQNAQYLDMSDKKESLRVGP RDNFEDLIDSIAKFHGELSAAGYHSETYAHYGADDSRHSWRDLIWKGDPTPLETPGATLNDDENGTYNSWFRRGLPTIVQGPLETGNPLDASGSGGDETV PTDSGQAPALAGVKASFRHGSKGKGQANTKRGYEHQESYNDARAQWAALYGVIKITQLADWHPNDKGGT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|