Strain | Pseudomonas aeruginosa strain AZPAE15025 AZPAE15025_contig_34, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGGCAGGTGCGGCGAGCACGGCCAGCAGGCTCAGGATGAGATAGCGCATGGGGACTCCAGGCGGCCGTCGCCAGGTAAGGAAGGCAAGACGTGACGGCTT GCGCCTCGCAGCGTGAATTCTGCTGAACCCGGCCTGAATCGGGCCTGAACGAAGCCTGAACAATTTCTGAACGAACCGTCAGAAAAACCCGGAATGGCTC AAGAACGGACCTCGGCGAAACGTTCGGAAAACCGAACGCCATGCCCCGAAAATATTCGGAAGAGCGGACGAAAGGCCATTTCGGGGCATTTTCATCCAAA TTTAATTTCTTTTACTTTCAAATATTTAGGCTAATAAAAGCCGGATTTCATAAGCTGGCATGCATCCTGCCACTACACTGTTCGGCAAGCACGATACTCT CGTGGCTTCCCCCGCCGGGGAAAACCGCGAAACACCCTGTCCCGGAGAGGCCAGGCGCTCGCGGCTCAATAAAAATCAAAACAAGTCGAGGAAGAAATTC
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DNA Sequence for Gene |
>NT41_RS27100
ATGCGTATCGCTCCCAGTCTGCTGAGCACCGCCATCGTGGCCGCTCTGTTGTCCGCTCCGGTCGTCGCTGACGAGCTCACCGGCACGCTGAAGAAGATCA AGGACACCGGCACCATCACCCTCGGTCACCGTGACGCTTCGATTCCCTTCTCCTACCTCGGCACCGAGCCGGGCAAGCCGATCGGCTACTCCCACGACCT GCAACTGAAAGTGGTCGAGGCGGTGAAGAAGGAACTCAACCTCCCCGACCTGAAGGTCCGCTATAACCTGGTCACCTCGCAGACCCGCATCCCGCTGGTG CAGAACGGCACCGTGGACATCGAGTGCGGCTCTACCACCAACAACGAAGAGCGCCAGAAGCAGGTCGACTTCTCCGTCGGCATCTTCGAGGTCGGCACCC GCCTGCTGTCGAAGAAGACCGCCAACATCAAGGACTTCGACGACCTCAAGGGCAAGAACGTGGTGACCACCGCCGGCACCACCTCCGAGCGCCTGCTCAA GGCCATGAACGCGGACAAGAAGATGGGCATGAACATCATCTCCGCCAAGGACCACGGCGAGTCCTTCATGATGCTCGAGTCCGGCCGCGCGGTGGCCTTC ATGATGGACGACGCGCTGCTCTACGGCGAAATGGCCAAGGCCAAGAAGCCGGACGACTGGGTCGTCGGCGGCACCCCGCAGTCCTTCGAGATCTACGGCT GCATGGTGCGCAAGGGCGACGCGGCGTTCAAGAAAGTGGTCGACAAGGCCATCACCGATACCTACGCCTCCGGCGAGGTCAACAAGATCTACGACAAGTG GTTCACCCAGCCGATCCCGCCGAAGGGCCTGAACCTCAACTTCCCCATGAGCGAAGAGCTGAAGAAGCTGATCGCCAGCCCGACCGACAAGGCCGCCGAG CAGATGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGAGCGCCAGGCGTTCCTCCCGGAGCGCCAGCGCTTCGCGCGTCGCCCCCGCCTCGCGGCGGGGCCTCGGGGACGCGGGAGGGGCCTGCCCCTCCCCAGC CGTCTCCCCCGGAAGAGCAGCGCCGCCGGCCCGTACGGCCGCGCCGGCGCCTGCCTTCCCCGCCAGTGTCTGCAACCGATTGAACCGAGGGGAAACCCCA ACATGAATTACAACTGGGACTGGGGCGTGTTCTTCAAGTCCACCGGGATCGGCAGCGAAACCTACCTCGACTGGTACATCGCCGGTCTGGGCTGGACCAT CGCCATCGCCCTGGTCGGCTGGATCATCGCCCTGGCGCTGGGCTCGCTGCTCGGCGTCATGCGCACCGTGCCGAACCGCCTGGTATCGGGGATCGCCACC GCCTACGTGGAAATCTTCCGCAACGTGCCGCTGCTGGTGCAGCTGTTCATCTGGTACTTCCTGGTACCCGACCTGCTGCCCGAGGGCCTGCAGACCTGGT
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Amino Acid Sequence |
>ABC transporter
MRIAPSLLSTAIVAALLSAPVVADELTGTLKKIKDTGTITLGHRDASIPFSYLGTEPGKPIGYSHDLQLKVVEAVKKELNLPDLKVRYNLVTSQTRIPLV QNGTVDIECGSTTNNEERQKQVDFSVGIFEVGTRLLSKKTANIKDFDDLKGKNVVTTAGTTSERLLKAMNADKKMGMNIISAKDHGESFMMLESGRAVAF MMDDALLYGEMAKAKKPDDWVVGGTPQSFEIYGCMVRKGDAAFKKVVDKAITDTYASGEVNKIYDKWFTQPIPPKGLNLNFPMSEELKKLIASPTDKAAE QM
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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