Strain | Pseudomonas aeruginosa strain AZPAE14925 AZPAE14925_contig_3, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GAGGTCGCAGTGACCCCGTTTAAAGAGACCGGCGATTCTAGTGAAATCGAACGGGCAGGTCAATTTCCAACCAGCGATGACGTAATAGATAGATACAAGG AAGTCATTTTTCTTTTAAAGGATAGAAACGGTTAATGCTCTTGGGACGGCGCTTTTCTGTGCATAACTCGATGAAGCCCAGCAATTGCGTGTTTCTCCGG CAGGCAAAAGGTTGTCGAGAACCGGTGTCGAGGCTGTTTCCTTCCTGAGCGAAGCCTGGGGATGAACGAGATGGTTATCCACAGCGGTTTTTTCCACACG GCTGTGCGCAGGGATGTACCCCCTTCAAAGCAAGGGTTATCCACAAAGTCCAGGACGACCGTCCGTCGGCCTGCCTGCTTTTATTAAGGTCTTGATTTGC TTGGGGCCTCAGCGCATCGGCATGTGGATAAGTCCGGCCCGTCCGGCTACAATAGGCGCTTATTTCGTTGTGCCGCCTTTCCAATCTTTGGGGGATATCC
|
|
DNA Sequence for Gene |
>NS41_RS03295
GTGTCCGTGGAACTTTGGCAGCAGTGCGTGGATCTTCTCCGCGATGAGCTGCCGTCCCAACAATTCAACACCTGGATCCGTCCCTTGCAGGTCGAAGCCG AAGGCGACGAATTGCGTGTGTATGCACCCAACCGTTTCGTCCTCGATTGGGTGAACGAGAAATACCTCGGTCGGCTTCTGGAACTGCTCGGTGAACGCGG CGAGGGTCAGTTGCCCGCGCTTTCCTTATTAATAGGCAGCAAGCGTAGCCGTACGCCGCGCGCCGCCATTGTCCCATCGCAGACCCACGTGGCTCCCCCG CCTCCGGTTGCTCCGCCGCCGGCGCCAGTGCAGCCGGTATCGGCCGCGCCCGTGGTAGTGCCACGTGAAGAGCTGCCGCCAGTGACGACGGCTCCCAGCG TTTCGAGCGATCCCTACGAGCCGGAAGAACCCAGCATCGATCCGCTGGCCGCCGCTATGCCGGCCGGAGCAGCGCCTGCGGTGCGCACCGAGCGCAACGT CCAGGTCGAAGGTGCGCTGAAGCACACCAGCTATCTCAACCGTACCTTCACCTTCGAGAACTTCGTCGAGGGCAAGTCCAACCAGTTGGCCCGCGCCGCC GCCTGGCAGGTGGCGGACAACCTCAAGCACGGCTACAACCCGCTGTTCCTCTACGGTGGCGTCGGTCTGGGCAAGACCCACCTGATGCATGCGGTGGGCA ACCACCTGCTGAAGAAGAACCCGAACGCCAAGGTGGTCTACCTGCATTCGGAACGTTTCGTCGCGGACATGGTGAAGGCCTTGCAGCTCAACGCCATCAA CGAATTCAAGCGCTTCTACCGCTCGGTGGACGCACTGTTGATCGACGACATCCAGTTCTTCGCCCGTAAGGAGCGCTCCCAGGAGGAGTTCTTCCACACC TTCAATGCCCTTCTCGAAGGCGGCCAGCAGGTGATCCTCACCAGCGACCGCTATCCGAAGGAAATCGAAGGCCTGGAAGAGCGGCTGAAATCCCGCTTCG GCTGGGGCCTGACGGTGGCCGTCGAGCCGCCGGAACTGGAAACCCGGGTGGCGATCCTGATGAAAAAGGCCGAGCAGGCGAAGATCGAGCTGCCGCACGA TGCGGCCTTCTTCATCGCCCAGCGCATCCGTTCCAACGTGCGTGAACTGGAAGGTGCGCTGAAGCGGGTGATCGCCCACTCGCACTTCATGGGCCGGCCG ATCACCATCGAGCTGATTCGCGAGTCGCTGAAGGACCTGTTGGCCCTTCAGGACAAGCTGGTCAGCATCGACAACATCCAGCGCACCGTCGCCGAGTACT ACAAGATCAAGATATCCGATCTGTTGTCCAAGCGGCGTTCGCGCTCGGTGGCGCGCCCGCGCCAGGTGGCCATGGCGCTCTCCAAGGAGCTGACCAACCA CAGCCTGCCGGAGATCGGCGTGGCCTTCGGCGGTCGGGATCACACCACGGTGTTGCACGCCTGTCGTAAGATCGCTCAACTTAGGGAATCCGACGCGGAT ATCCGCGAGGACTACAAGAACCTGCTGCGTACCCTGACAACCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
CGCAGCCCACGAGGCAAGGGACTAGACCATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCGCTGCAACTGGTCGCCGGCGTCGTGGAACGCCGC CAGACATTGCCGGTTCTCTCCAACGTCCTGCTGGTGGTCGAAGGCCAGCAACTGTCGCTGACCGGCACCGACCTCGAAGTCGAGCTGGTTGGGCGCGTGG TACTGGAAGATGCCGCCGAACCCGGCGAGATCACCGTACCAGCGCGCAAGCTGATGGACATCTGCAAGAGCCTGCCGAACGACGTGCTGATCGACATCCG TGTCGAAGAGCAGAAACTCCTGGTGAAGGCCGGGCGTAGCCGCTTCACCCTGTCCACCCTGCCGGCCAACGATTTCCCCACCGTGGAGGAAGGTCCCGGC TCGCTGAACTTCAGCATTGCCCAGAGCAAGCTGCGTCGCCTGATCGACCGCACCAGCTTCGCCATGGCCCAGCAGGACGTGCGTTACTACCTCAACGGCA
|
|
Amino Acid Sequence |
>chromosomal replication initiation protein
MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPP PPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA AWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRP ITIELIRESLKDLLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDAD IREDYKNLLRTLTT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|