Pseudomonas aeruginosa AZPAE14928, NS44_RS05095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14928 AZPAE14928_contig_5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTCGTCGCCCGATCCCGCCAGCCAGGGCGCTGGCCATGCTCGCCGTCCTGGCGCTGCTGGCCGGCTGTTCCACGCTGTCGCCGTATTCCAGACTGACCA AGCTCGACCTCGCCCTGAGCGCCGGCGAGCGGGTCAATCCCGACCTCAATGGCCGGCCGTCGCCGGTGGTAGTGCGGCTGTTCGAGCTGAAACACCCGGT GGCGTTCGAGAACGCCGACTTCTTCAGCCTCTACGAACGTCCCAAGGAGACCCTGGACCCCGACCTGGTGACCAGCGAGGAGCTGGAGCTGCGTCCCGGC GAGCGGGTCGAACTCAAGCTCAGCGTGGGGGAGGGGAGCCGCTACGTGGGCGTGCTCGCCGCCTACCGCGATCTCGGCGAGGCAAGCTGGCGCTACGTGG TGCCGGTCACGGCGAAAGAGCTGACCCGGGTAGAGCTGAAGCTGGGCCAGAAGGGCATCCTGAATGCCGGCGAACTGCTCGGCAAGGCGGGTGACGCGCG
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| DNA Sequence for Gene |
>NS44_RS05095
ATGAACGTGCACAAGATCGTCTGGCAGGAAGGCATGCTGCTGCGCCCGCAGCACCTGCAACACAACGACCGCTACTACGACAACCAGATGAAGGCCCGGA CCCAGTTGCTGGGCAGCTACAACTGGGGCTTCCTCGCCCTGGAGCTGGACCGCCAGTTCCTCAACATGGGCAAGCTGGTGATCAGCCAGGCCTCCGGCGT ATTGCCCGACGGCAGCCTGTTCGAACTCGGCGGCAACACCGAGCCGCTCGCCCTCGACGTGCCGCCCAATACCTCGAACGTGCCGATCTACCTGGCCCTG CCGCTGGTCACCGGCAACCACATCGAGGCGCGCCGGCCGGAGCAGGCCGAGGTCCTGGCGCGCTATACCGCCTATGACCTGGAGGTGGCGGACTCCAACG CCGGCGAGGATTCCATGGTGCAGGTCAGCTGCGCGCGGCCGGATTTTCGCCTGCTGCTCGGCGAGCAGCAGAGCGACCAGGCCTACGTCAAACTGAAGGT GGCGGTGGTGCTGGATACCACGCCGGACGGGGTGATCAGCCTCGACCCCGACTTCGTGCCGAGCTACCTCCACGCCCACGCATCCGCCTACCTGCTGTCC TGCCTGAAGGAGGTGATCAGCATGCTCGGCCATCGCGGCGACACCATCGCCGAGCGTATCCGGTCCAATGGCAAGGTCGGCGGCGCGGAGGTCGGCGATT TCATGATGCTGCAACTGATCAATCGCACCGAGTTGCTGCTGCGCCACTACCTGGGATTGGAGCAGGTGCATCCGGAGCAGTTGTACCGGGTGCTGCTGAC CATGCTCGGCGACCTCGCCACCTTCGGCAGCGAGAGCAAGCGTCCGCGCCTGGACAGCCGTTACCAGCACAGCGACCAGGGCGCCAGCTTCCGCAGGCTG ATGGAGGCGATCCGCCAGGTCCTGTCGATGGTGCTCGAGCAGCATGCCATCGAACTGCCTCTCCAGGCCCGCCAGTACGGCATCCTGGTCTCGCCCCTGC ACGACCACAAGCTGCTCGGCAGCGCCTCGTTCGTGCTCGCCGCCAGTGCCAATTGCGAGTCGGAGGAACTGCGCCAGCGCCTGCCCGCGCATCTCAAGGT GGGTGCGGTCGAGCACATTCGCCAACTGGTCAACCTGCACCTGCCGGGGATCCGGGTCAAGCCGCTGCCGGTGGCGCCGCGGCAGATCCCGTTCCACTCC AACAAGACCTATTTCATTCTCGAACCCAACGCCGAGGACATGGCCCAGCTGGAGCGCTCCGGCGGTTTCGCGTTCCACGTATCCGGCGAGTTCTCCGAGC TTGAACTGAAATTCTGGGCCATCAGGAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACATGATCAAGGAAAGGGAATACCACGAGGACGAGAAGACCGTCCTCCTCGATCACCAGGGACAGGTACCGGCCCAGGGGCCGCTGACCGATTTCGCCGA ACCGCCGCGCTTCGAGCAGCTCGAGGAGCGGATGATCTACGCGGCGCGCCTGCGTCCGGGCGAGGCCTTCAACGTCAGCCTGAACCCGCTGGTGGCGGCG GCTTCCGAACTGCTTTCGGAAGTGGTCCGGCTCAAGCACAGCACCGTGCTGGAGAACCTTGCGGCGCTCAAGGAGCGGTTGACCTCCGCCATGAAGCTCT TCGAATTCCGCGCCGTGCAGGATGGCGTGGAAAACAGCCAGGTCATGGCGGCGCGCTACGTGCTGTGCACGGTGGTCGACGAGGCGGTGGTGACCACCCC GTGGGGCAACGAAAGCGAATGGTCGAAGATCAGCCTGCTGAGCAGCTTCCATAACGAGACCTTCGGCGGCGAGAAGTTCTTCCAGTTGCTCGACCGGCTG
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| Amino Acid Sequence |
>type VI secretion protein
MNVHKIVWQEGMLLRPQHLQHNDRYYDNQMKARTQLLGSYNWGFLALELDRQFLNMGKLVISQASGVLPDGSLFELGGNTEPLALDVPPNTSNVPIYLAL PLVTGNHIEARRPEQAEVLARYTAYDLEVADSNAGEDSMVQVSCARPDFRLLLGEQQSDQAYVKLKVAVVLDTTPDGVISLDPDFVPSYLHAHASAYLLS CLKEVISMLGHRGDTIAERIRSNGKVGGAEVGDFMMLQLINRTELLLRHYLGLEQVHPEQLYRVLLTMLGDLATFGSESKRPRLDSRYQHSDQGASFRRL MEAIRQVLSMVLEQHAIELPLQARQYGILVSPLHDHKLLGSASFVLAASANCESEELRQRLPAHLKVGAVEHIRQLVNLHLPGIRVKPLPVAPRQIPFHS NKTYFILEPNAEDMAQLERSGGFAFHVSGEFSELELKFWAIRN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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