Strain | Pseudomonas aeruginosa strain AZPAE14945 AZPAE14945_contig_5, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCGAATACAAGGAGTTCGGCATCCGCCTGACCCTCACCCCGACGGTGATGAACAACCGCCGCATCGCTCTCAAGGTGGCGCCGGAGGTCAGCGAACTGGA CTACAGCGCCGGCATCCAGAGCGGCGGGGTGGCGGTGCCGGCACTGCGCGTCCGGCGCACCGACACCAGCGTGATGCTGGCCGACGGCGAGAGCTTCGTG ATCAGCGGGCTGACCAGCAGCAACTCGGTGAGCAACGTCGACAAGTTTCCCTGGCTGGGCGACATCCCGATCCTCGGTGCGTTCTTCCGCTCGACCAAGC TGGACAAGGACGACCGCGAGCTGCTGATGATCGTCACCCCGCACCTGGTCCAGCCGCTGGCCGCCGACGCACAGTTGCCGGACCTGCCCGGCGAGGGCCT GCGGCACTACGATCCGGGGTTCTCGCGCCTGTACTTCCTCGAGCGCGGCGAGTACGACGGCCAGCAGAACGACACCGGTCTGTCGGATTAGGAGGCGCGC
|
|
DNA Sequence for Gene |
>NS61_RS03735
ATGAACCAGAACTTCGTGGCGCTGACCCAGCATCCCGGCGAACTCGACTGGTTGCAGAACAGCCTGGCGTCCGCCGGCCAGGTGGTTCCGGCAGGCAGCG CCAGCCTGGAGGAGCTGCTGGCGCTGCTCGACGTCACCGCCGCCGGGGTGCTGTTCATCAGCCTCGGCAAAAGCAACCTGGTGTCCCAGGGCGCGCTGGT CGAGGGATTGGTATCGGCGCGGCCGATGCTCTCGGTGGTGGCCATCGGCGACGGCCTGGACAACCAGTTGGTGCTGGCGGCGATGCGCGCCGGCGCGCGC GACTTCATCACCTACGGCGCCCGCGCCAGCGAGCTGACCGGGCTGATCCGGCGCCTCGGCGGACGCCTGCCCAGCGTGCCGGTGAGCGCGGCGCGCCAGG GCGAGCTGCTGACCCTGGTCAGCGCCCGACCGGACGCCGACGGCGCCTTCGTCGCCTTGCACCTGGCCAAGGCGTTGCAGGAGCAGACGCCGAACCAGGT CCTGCTGCTGGACGTCGGCCAGCCCACCGGCGAGGCGCTGGCGATCCTCGGCCTGGACTCGGCCTTCACCTTCAGCGATGCCTTGCGCAACCTGCGGCGC CTCGACCAGACCCTGATCGACAGCGCCTTCACCCGCCTCGACAGCGGCCTGCGGATACTCAGCCTGACCGACGAGCCCGGCGTGCTGGAGCGAGTCACCA CCGCCGAACTCTATCTGTTGCTGGGCAACCTGCGCGGGGCGTTCAGCCATGTGGTGGTCAACCTCACCGGGCTGCCCGAGGGCGAGCTGAGCAACCAGCT GCTGGTGCAGGCCAACCGCGTGCTGTGGATGGTCGACCAGAGCGTGCCGTCCTGCAAGAAGGGCCTGGAGCGCCTGCGCCGCCTGCGCGAGCGCAACCTG CCGTTGCCCTCCATCGAGTTGCTGATCGAGCGCTACCTGCCCAATGTGGCGCCGGACCAGCAGGCCCTAAGCCGGATGTTCGACCTCGATCTGTTCGGTG TCCTGCCGTTGTCCCCGGAATCGCGCCTGCGCGCGAAGAACCTCGGCAAGAGCCTGTTCGAGGTGGCGCCGCGCGACCCATTGGCGGCCAAGCTGCGGCA ACTGGCGGACAGCCTGTGCGTGACACGCGGCGAGCGCCGTTCGCTGCTGTCCTGGCTCGGCCGGGCCAAGGCGGCGCTGCTATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GCACGGGATTCGGCGCGCGTCCTGACGGCGGTGCCTTCCACTCCCGCCAGGAGCAGGACATCCAGGCGCTGAAGCTGCGCCTGCACCGCTACATCATCGA CGAGATCGACGAAGACGGCATGAACCTGCTGGAGGGCGCGCGCTCCGCCGTGGTCCAGTACGTCTCGGAAAAGGTCTGCGAATACGGCTCGCGCCATCAA CTGGCGATCTCCCGCTACGAACTGGACCGCCTGGCCGAAGAGGTGGTCGACGAACTCACCGGCTTCGGCCCGCTGGAGATCCTCCTGCGCGATCCCGGCG TCTCGGAAATCCTCGTCAACGGGCCGGGCCGGGTGTTCGTCGAGCGGGAAGGGCGGCTCTACCAGAGCGACCTGCGCTTCATCGACGACCACCATGTGCT GCGGGTGATCCAGCGTATCCTCGCGCCCCTCGGCCGACGCCTGGACGAGTCCAGCCCGATGGTCGACGCGCGCCTGCCGGACGGCAGCCGGGTCAACGCG
|
|
Amino Acid Sequence |
>putative pilus assembly protein
MNQNFVALTQHPGELDWLQNSLASAGQVVPAGSASLEELLALLDVTAAGVLFISLGKSNLVSQGALVEGLVSARPMLSVVAIGDGLDNQLVLAAMRAGAR DFITYGARASELTGLIRRLGGRLPSVPVSAARQGELLTLVSARPDADGAFVALHLAKALQEQTPNQVLLLDVGQPTGEALAILGLDSAFTFSDALRNLRR LDQTLIDSAFTRLDSGLRILSLTDEPGVLERVTTAELYLLLGNLRGAFSHVVVNLTGLPEGELSNQLLVQANRVLWMVDQSVPSCKKGLERLRRLRERNL PLPSIELLIERYLPNVAPDQQALSRMFDLDLFGVLPLSPESRLRAKNLGKSLFEVAPRDPLAAKLRQLADSLCVTRGERRSLLSWLGRAKAALL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|