Pseudomonas aeruginosa AZPAE15032, NT48_RS13845 (prpB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE15032 AZPAE15032_contig_7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGGTGGTGTCGCTGAGCCACGCCGAGCTGATCGAGCTCTACGAGATCCGCGAGTCCCTGGAAGGCATGGCCTGCCGACTGGCCGCCGAGCGCATGAGC CAGGCCGAGATCGACGAGTTGCGCCGGGTGCTCGATACCCACGAGCGCGACGAGGCGTTCCAGGCCGGGCGCGGCTATTACCAGCAGGAAGGCGACTACG ACTTCCACTACCGGATCATCCAGGGCAGCGGCAACGCCACCCTCACCCGCATGCTCTGCGGCGAGCTCTACCAACTGGTGCGGATGTACCGCATCCAGTA CTCGACCACGCCGAACCGGCCGCGCCAGGCCTTCGCCGAACACCACCGCATTCTCGACGCCATCGCCGACCGTGACGGCGAACTGGCCGAGCTGCTGATG CGCCGCCACATCAGTGCGTCGCGCCGCAATATCGAGCGCCAGCTGGAACCCCAGCCGGCGAAGCTCGCCTCCGCTTCCTCCACCGTCTAAGAGGTCCGTG
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| DNA Sequence for Gene |
>NT48_RS13845
|prpB
ATGAGCCAGACGTCCCTTACCCCCGGCCAGCGCTTCCGCGAAGCCGTGGCCACCGAACACCCGCTGCAGGTGGTCGGCACCATCAACGCCAACCACGCCC TGCTGGCCAAGCGCGCCGGCTTCAAGGCCATCTACCTGTCCGGCGGCGGTGTGGCCGCCGGTTCCCTGGGCCTGCCGGACCTGGGTATCAGCGGCCTCGA CGACGTGCTCACCGACGTGCGCCGGATCACCGACGTCTGCGACCTGCCGCTGCTGGTGGACGTCGACACCGGTTTCGGCTCCTCGGCGTTCAACGTCGCC CGCACGGTGAAGTCGATGATCAAGTTCGGCGCCGCCGCGATGCATATCGAGGACCAGGTCGGCGCCAAGCGCTGCGGCCATAGGCCGAACAAGGAGATCG TCTCGCAGCAGGAGATGGTCGACCGCATCAAGGCCGCCGTCGATGCCCGCAGCGACGACTCCTTCGTGATCATGGCGCGCACCGACGCGCTGGCCGTGGA AGGCCTGCAGGCCGCCATCGACCGCGCCTGCGCCTGTGTCGAGGCCGGTGCCGACATGATCTTCCCGGAAGCCATGACCGAACTGGCCATGTACAAGGAA TTCGCCGCCGCGGTGAAGGTGCCGGTGCTGGCCAACATCACCGAGTTCGGCGCCACCCCGCTGTTCACCACCGACGAACTGGCCTCCGCCGACGTGTCCC TGGTGCTCTACCCGCTGTCGGCCTTCCGCGCCATGAACAAGGCGGCGGAGAACGTCTACACCGCGATCCGTCGCGACGGCACCCAGAAGAATGTGATCGA TACCATGCAGACCCGCATGGAGCTGTACGATCGCATCGATTACCACAGCTTCGAGCAGAAGCTCGACGCGCTCTTCGCGCAGAAGAAGAACGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACATCAAGCCCGGCGTGCGCCTGAGCGCCGGTCCGCAAACCCCGTGAAACCGAGTTGCAGCATCCAGAAAAAGTTCAAGAAAGGAGAGAGCAATGGCTGA AGCAAAAGTACTGAGTGGCGCCGGCCTGCGTGGCCAGGTGGCCGGTCAGACAGCCCTGTCCACCGTCGGCCAGGAAGGCGCCGGCCTGACCTACCGTGGC TACGACGTCCGCGACCTGGCGGCGGCGGCGATCTTCGAGGAAGTCGCCTACCTGCTGCTCTACGGCGAACTGCCGAACAAGCAACAGCTCGACGCCTACC TGAAGAAGCTCCAGGGCCAGCGCGACCTGCCGCAGGCGCTGAAGGAAGTTCTCGAACGGATTCCCAAGGACGCCCACCCGATGGACGTGATGCGCACTGG CGCCTCGGTCCTCGGCACCCTGGAACCGGAGCTGAGCTTCGACCAGCAGCGCGACGTCGCCGACCGCCTGCTCGCCGCCTTCCCGGCGATCATGACCTAC
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| Amino Acid Sequence |
>2-methylisocitrate lyase
MSQTSLTPGQRFREAVATEHPLQVVGTINANHALLAKRAGFKAIYLSGGGVAAGSLGLPDLGISGLDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVA RTVKSMIKFGAAAMHIEDQVGAKRCGHRPNKEIVSQQEMVDRIKAAVDARSDDSFVIMARTDALAVEGLQAAIDRACACVEAGADMIFPEAMTELAMYKE FAAAVKVPVLANITEFGATPLFTTDELASADVSLVLYPLSAFRAMNKAAENVYTAIRRDGTQKNVIDTMQTRMELYDRIDYHSFEQKLDALFAQKKNA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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