Pseudomonas aeruginosa AZPAE15032, NT48_RS28210 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE15032 AZPAE15032_contig_37, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGCGATATCAGCGACAACCTCGATGTCCTGGTCGTCGACACTGCCGCCGGAATCGGCGATTCGGTGGTCAGTTTCGTCCGCGCCGCGCAGGAGGTGC TGCTGGTCGTCTGCGACGAGCCGACCTCGATCACCGATGCCTACGCCCTGATCAAGCTGCTCAACCGCGACCACGGCATGACCCGCTTCCGGGTCCTGGC CAACATGGCCCACAGCCCGCAGGAAGGACGCAACCTGTTCGCCAAACTGACCAAGGTCACTGACCGTTTCCTCGACGTCGCACTACAGTATGTAGGTGTC ATCCCTTACGACGAGTCGGTACGCAAGGCCGTGCAGAAACAGCGAGCCGTATACGAGGCATTCCCCCGCTCGAAGGCGTCCCTGGCCTTCAAGGCGGTCG CGCAGAAGGTCGACAGCTGGCCGCTGCCGGCCAACCCGCGCGGGCATCTGGAGTTCTTCGTCGAACGACTGGTCCAACACCCCGCGACAGGTTCGGCCGT
|
|
| DNA Sequence for Gene |
>NT48_RS28210
|fliA
ATGACAGCGGCCTCTGGAGTGCGTATGTATAGCAAGGCGCAAGCGCAGAACTCCCAGGAGCAACTGATCCAGCGTTACGCACCACTGGTCAAGCGCATCG CCTATCACCTGCTCGGCCGCCTGCCGGCCAGCGTGCAGGTGGAGGACCTGATGCAGGCCGGCATGATCGGCCTGCTCGAGGCCGCGAAGAAATACGACGC CGGCAAGGGCGCCAGCTTCGAGACCTATGCCGGCATCCGCATCCGCGGGGCCATGCTCGACGAGGTCCGCAAGGGCGACTGGGCGCCGCGTTCGGTGCAC CGCAACACGCGCATGGTGACCGACGCGATCCGCGCGATCGAGGCGAGAACCGGACGCGACGCTAAAGATCACGAAGTTGCTGCCGAACTCCAATTGAGCC TCGAAGATTACTACGGCATCCTCAGCGACACGCAGGGCAGCCGCCTGTACAGCTTCGACGACCTGTTGCAGGACGGCGAACATGGATTGCCGGAAGACAC CAGCCTCAGTCACAACGAACCGATCCACGGCCTGCTCGACGAACGTTTTCAGGCGGCCCTGGCGGATGCCATCGCCAAGTTGCCGGAGCGCGAGCGCCTG GTGCTGGCGTTGTATTACGACGAGGAACTCAACCTCAAGGAGATCGGCGAGGTACTGGGCGTCAGCGAATCGCGGGTCAGCCAGTTGCACAGCCAGTGCG CCGCGCGTTTGCGTGCGCGCCTGGCCGATTGGCGGTCGGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACCGGCCTCGACCGCAGCTTGTAACCGTTAACGCAAAAGAATGTGTGGCGCGTCCCCTGGGGCGCGCTCTGGTCTGTACGGAGGTTTACTTGGACAAGAA CATGAAAATTCTCATCGTGGACGACTTTTCCACGATGAGACGCATCATCAAGAACCTCTTGCGGGACTTGGGCTTCACCAATACCGCCGAGGCCGACGAC GGCACCACGGCGCTGCCGATGCTGCACAGCGGCAATTTCGACTTTCTCGTCACCGACTGGAACATGCCGGGCATGACCGGCATCGATCTGCTGCGCGCGG TTCGCGCCGACGAGCGCCTCAAGCACCTGCCGGTGCTGATGGTCACCGCCGAGGCCAAGCGCGACCAGATCATCGAAGCGGCCCAGGCCGGGGTCAACGG CTATGTGGTCAAACCCTTCACCGCTCAGGTCCTGAAGGAAAAGATCGAGAAGATTTTCGAGCGGGTCAACGGCTGAAGCCGGCCAAGAGGGTGTCATGGT
|
|
| Amino Acid Sequence |
>RNA polymerase sigma 70
MTAASGVRMYSKAQAQNSQEQLIQRYAPLVKRIAYHLLGRLPASVQVEDLMQAGMIGLLEAAKKYDAGKGASFETYAGIRIRGAMLDEVRKGDWAPRSVH RNTRMVTDAIRAIEARTGRDAKDHEVAAELQLSLEDYYGILSDTQGSRLYSFDDLLQDGEHGLPEDTSLSHNEPIHGLLDERFQAALADAIAKLPERERL VLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRARLADWRSA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|