Pseudomonas aeruginosa AZPAE14955, NS71_RS13785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14955 AZPAE14955_contig_14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGGCGAGCTGCGCCAGATCACCCACCAGGGGCCGATGCTGCTGCAGGCGCAGAAGAACGACATCCGCCTGGAGGCCGAGCAGAGCGTGGAGGTCAGCG CCAGCCAGCAGCACGTGCTGGTCACCGCGAAGGAGCACATCACCCTGATGTGCGGCGGCGCCTACCTGACCCTCAAGGGCGGCAACATCGAGCTGGGCAT GCCCGGCAACTTCGTGGTCAAGGCGGCGAAGCACAGTCATGTCGGTCCCGCTCATGCATCGACCAGCTTCAACGCCTGGGATTCGACACCGTTCGATGAC CGGTATGTCCTGCGCGACGAAGCCACGCTGGAGCCGTTACCCAATATCGCCGTTGAAGTGATACGAGGCGATGGTGGTGTGGTGAAACTGATGACCGACA GCCAGGGCCGTTTACCCAAGCAACAACACCTGGCCATGGACCCGGTGCAGATACGCATCCTGGGCAAGGGCAGTCACAACAGCGACACGGAGTCCAACAC
|
|
| DNA Sequence for Gene |
>NS71_RS13785
ATGAGCAGCGAACCGCTCGAGCCGAATCAGGATGTGATCATCCCTCGCTCTCGCGACAGGCTGGGACGGCCTGTCTACAAGGCGCAGTTGACCCGTACCG ACAACCAGAGCGAAAAGGTGGCACTGGTTCGGCAGACCGCTCCCCTGCCGGTGATCTTCATTCCGGGGATCATGGGAACCAACCTGCGCAACAAGGCAGA CAAGAGCAAGATCTGGAGGCCGCCGAACGGTCTCTGGCCCATGGATGACCTGTTTGCCTCAATCGGAGCGTTATGGACCTGGTATTGGCGAGATGCAAAG GCTCGTCAAAGATTGCTGAAAGCGGAGAGAGTGGAAGTCGATGACCAGGGTACGATCGATGTCGGTCAATCTGGTTTGTCCGAAGAAGCTGCCCGCCTGC GCGGCTGGGGCAAGGTCATGCGCAGTGCGTATAACCCGGTCATGGGATTAATGGAGAGGCGACTGGAAAACATCGTCAGCCGCCGGGAACTCCAGGCATG GTGGAATGACGAAGCCCTCTCTCCTCCTGCAGATCAGGGTGAGGAGCAGGGAAAGGTTGGGCCGATCGATGAAGAGGAATTGCTCAAGGCCAGCCGATAC CAGTTCGACGTCTGGTGCGCCGGTTATAACTGGCTACAGTCCAACCGGCAGTCGGCGCTGGATGTACGCGACTACATCGAGAACACGGTGTTGCCTTTCT ACCAGAAGGAGCATGGTCTCGATCCCGAGCAAGTGAGTCGTATGAAAGTCATTCTGGTCACCCACTCGATGGGAGGGCTGGTGGCGCGGGCCTTGACGCA GTTGCACGGCTATGAGCGCGTATTGGGGGTGGTACATGGCGTACAACCTGCGACGGGTTCCTCGACCATCTACCATCATATGCGCTGTGGCTATGAAGGT ATCGCACAGGTCGTGCTGGGACGAAATGCCGGTGAAGTGACAGCCGTTGTCGCCAATTCGGCCGGCGCGCTGGAGTTGGCCCCTAGCGCCGAATACCGGG AAGGACGTCCCTGGCTGTTTCTGTGCGACGCGCAAGGCCAGGTACTCAAGGATATCGATGGAAAGCCTCGGGCTTATCCGCAGAATCAGGACCCTTATGA AGAGATATACAAGAGCTCTACGTGGTATGGATTGGTGCCTGAGCAAAATGCACAATATCTGGACATGTCAGACAAAAAAGAAAATTTAAGAGTTGGCCCC CGTGATAACTTTGAAGACTTGATAGATAGCATTGCTAAGTTTCATGGTGAATTGTCAGCAGCAGGCTATCACTCAGAGACCTATGCCCATTACGGAGCTG ACGATAGCCGCCATAGTTGGCGCGACCTGATCTGGAAGGGTGACCCTACCCCTCTGGAGACCCCTGGTGCCACACTCAACGACGATGAGAACGGCACTTA CAACAGTTGGTTCCGTCGGGGCTTGCCCACCATAGTGCAGGGTCCGCTGGAGGCGGGAAATCCACTGGACGCTTCCGGCAGCGGAGGTGACGAAACGGTA CCGACCGACTCCGGCCAGGCGCCTGCCCTGGCGGGCGTCAAGGCCAGCTTTCGGCATGGCAGCAAGGGCAAGGGACAGGCCAATACCAAACGGGGCTATG AGCACCAGGAGAGTTACAACGATGCTCGTGCTCAATGGGCAGCGCTATATGGGGTGATCAAAATCACCCAGTTGGCGGATTGGCATCCTAATGACAAAGG AGGGACATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGCATCCCCGTCGGTTGCTTGCTGTACTTGGGTTGGTGGTCTTGACCAGCATGACCAGTTGCACTTCGTTTTCTTCTTCTCGGAGCTCTTCCATGGACAA GACCGGATGGATCACTCATTGCTTTGGTCGCTTTCTGATTGATCTGCCACCTGACGCGGTAGTCAATGCTGGATACTACCTATGGGGAGACAGAATTGAG TACTTAGATGATAAACCTACCGAACTGGCAGCCAGGGTTGATCGTCTTGAACAAGAGTGGAGGACTCAGAAGCATAAATCCAAAGGTAACATGTTTCTTC GTAAAATTGACTTTGGCAATGAATCAGTAGGTTTATTGTCTTGGTCTTCAGAGGTTGCCTCTAAAACCTATTTATTGGATACCTATGTTACATCTAAGCC TACGTGGCATGCCTATCGTTGGAAAGGGAAAGTTTCGGTAGACAGAGAGCAACGTGCTGTAGAGATGTCTAGGACTTTAGCTCGAAATCTACGCTCGCGC
|
|
| Amino Acid Sequence |
>membrane protein
MSSEPLEPNQDVIIPRSRDRLGRPVYKAQLTRTDNQSEKVALVRQTAPLPVIFIPGIMGTNLRNKADKSKIWRPPNGLWPMDDLFASIGALWTWYWRDAK ARQRLLKAERVEVDDQGTIDVGQSGLSEEAARLRGWGKVMRSAYNPVMGLMERRLENIVSRRELQAWWNDEALSPPADQGEEQGKVGPIDEEELLKASRY QFDVWCAGYNWLQSNRQSALDVRDYIENTVLPFYQKEHGLDPEQVSRMKVILVTHSMGGLVARALTQLHGYERVLGVVHGVQPATGSSTIYHHMRCGYEG IAQVVLGRNAGEVTAVVANSAGALELAPSAEYREGRPWLFLCDAQGQVLKDIDGKPRAYPQNQDPYEEIYKSSTWYGLVPEQNAQYLDMSDKKENLRVGP RDNFEDLIDSIAKFHGELSAAGYHSETYAHYGADDSRHSWRDLIWKGDPTPLETPGATLNDDENGTYNSWFRRGLPTIVQGPLEAGNPLDASGSGGDETV PTDSGQAPALAGVKASFRHGSKGKGQANTKRGYEHQESYNDARAQWAALYGVIKITQLADWHPNDKGGT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|