Pseudomonas denitrificans ATCC 13867, H681_18000

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03186
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0048472 threonine-phosphate decarboxylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03186
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03186
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF17113 Regulatory signalling modulator protein AmpE IPR031347 Protein AmpE 157 232 3.2E-5
PANTHER PTHR34308 COBALAMIN BIOSYNTHESIS PROTEIN CBIB IPR004485 Cobalamin biosynthesis CobD/CbiB 4 305 3.0E-96
Pfam PF03186 CobD/Cbib protein IPR004485 Cobalamin biosynthesis CobD/CbiB 8 292 1.3E-92
NCBIfam TIGR00380 JCVI: adenosylcobinamide-phosphate synthase CbiB IPR004485 Cobalamin biosynthesis CobD/CbiB 8 278 4.8E-56
Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. IPR004485 Cobalamin biosynthesis CobD/CbiB 1 309 104.759544

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.