Pseudomonas denitrificans ATCC 13867, H681_17220

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0050661 NADP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02197
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0005975 carbohydrate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02197
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008712 ADP-glyceromanno-heptose 6-epimerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02197
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr00540 Lipopolysaccharide biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase 2 329 48.365749
NCBIfam TIGR02197 JCVI: ADP-glyceromanno-heptose 6-epimerase IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase 3 328 3.1E-129
Gene3D G3DSA:3.40.50.720 - - - 4 322 0.0
Pfam PF01370 NAD dependent epimerase/dehydratase family IPR001509 NAD-dependent epimerase/dehydratase 3 241 3.8E-43
Gene3D G3DSA:3.90.25.10 - - - 167 309 0.0
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains IPR036291 NAD(P)-binding domain superfamily 1 325 6.88E-52
PANTHER PTHR43103 NUCLEOSIDE-DIPHOSPHATE-SUGAR EPIMERASE - - 2 325 2.7E-53
CDD cd05248 ADP_GME_SDR_e IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase 3 328 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.