Pseudomonas denitrificans ATCC 13867, H681_16440
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas denitrificans ATCC 13867, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTTCGCTGACCGAGCCACGGTGCGCCAGGCAGATGAAGCCGTATTCGTCACACCCGCCGTACACCAGCTCGTTGGGCTCCACCGCATCCGACGCGAAGCG CTGCATGAAGGCCGCAATCGCCGTTGCATCCAGACCGGACTGGTACTGGAAGCTCAATTCGAATCCCAACTCCTGGAACTCATCGACACACAACTTCTTG CGCAAACGACGAGAACGATTGGTGGCCATCTGACAACCTCCTGCGGATAAGGCGACAGGTCGGCCTTATCATGATTATTCCAACTACTGCCCGACGCTCC CCGGGCAGGCCATCCACAACTCTAACAGCTCCACCGCCGCTCCCATGACAACTGGCATGTGTTGCCCAGCGCAACACGCGGCAGCTTGCGGCATAATGTC CGCAGCTCCGGGGAAACAAGGAGCTGCTCATTCGTATTGTTGCGTTTCATCTTTTCATTTTTTCAAGTCAATGCCCGACCACTGGGATGTCACCTTTCCT
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| DNA Sequence for Gene |
>H681_16440
ATGTTCAAATCGCTGCGTGTTCTCGCCTTCGCCACATTATTACCCTTCACCCTGCCGGCACTGGCCCAGATCAACACCACCCTGCCCGACCGCGTTGCAA AGGCCCTGAAGGCCAGCAAGTTGACCAATGACGCGCTGTCGCTGGTGATGATTCCCCTCGACGGCCCCGGCAATCCAACCTACTTCAACGCCGATGTCTC GGTGAACCCGGCGTCAACCATGAAGCTGTTCACCACTTACGCCGCCCTGGAAATGCTCGGCCCGACGTACCAATGGCAGACCGAGTTCTACACCGACGGC CAGCTCAGGGACGGCGTGCTCAACGGCAACCTGTACCTCAAGGGCGGCGGCGACCCCAAGCTGAACATGGAGAAGCTCTGGCTGCTCATGCGTGACCTGC GCGCCAATGGCGTCAGCAAGGTCACCGGCGACCTGGTGCTGGACCGCAGCTACTTCAACATTCCGCAGTTGCCGGTGTTCAACGACGACGGCGGCGACGA CAACAAACCCTTCCTGGTCGGCCCCGACTCCCTGCTGGTCAACCTCAAGAGCGTGCGCCTGGTCGTGCGCTCCGACGGCGGAAAGGCCAGCGTGCTGATG GACCCGCCGCTGGCCAACGTGCGTATCGACAACCAGGTCAAGGTCAGCAAGGCGGCGCCCTGCCCGGCCTGGCCGAAACTGCGTTTCAACCCCGTCACCC AGTTCGACGGCACCTCGCTGGTGGCAACCGGCCAGATCCCATCGGGCTGCAGCGCGCAGACCTACATGTCGCTGCTCGACCATCCGGGCTACACCGCCGG TGCCGTTCGCGGCATCTGGCGGGAGCTGGGCGGCAGCATCATGGGCAAGGACCGCGAAGGCAACGTGCCCAAGAGCGCCACGCTGGTCGCTCGCGCCAAC TCACCGGACGTGGTGGAAGTCATCCGTGACATCAACAAATTCAGCAACAACACGATGGCGCGCCAGCTGTTCCTCTCCCTGGGCGAACGCTTCCGCAACA GTGCCGATGCCGATGACGCCCAGGCCGCGCAGCGGGTGATTCGCCAATGGCTGGCCCGCAAGGGCATCACCGCCACGCACCTGGTGATGGAGAACGGCTC CGGCCTGTCCCGCGACGAGCGCGTCAGCGCTCGCGAGATGGCCGCGATGCTGCAAGCCGCCTGGCACAGCCCCTATGCCGCCGAGTACATCTCCTCGCTG CCGATCGTGGCGAAGGACGGCACCATGCGCAAACGCCTGCGCGGCACCCCGATGGCCGGTGAGGCGCACGTCAAGACCGGTACGCTGAACACGGTCCGCG CCCTGGCCGGCTTCAGCCGCGACGCCAACGGACGCAACTGGGTGGTGGTGGCGATCCTCAACAGCAATCGGCCTTGGGGGGCCTCGTCCATCCTCGACCA GGTATTGCTGGACCTCTACAGCAGCACCAGGCGCACCGGCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACGCAAGGCCCCCGGTCCATGCCGGGGTCCTCATCCGTCGTCGCGTTCCAGCCGATCACGCCCCGAGCGCTTCGCCCGGTAAACCGCGCGGTCCACCTT GCGCAGCAGATCGTCGGCCGTCTCGCCGAGACGCCAACCGACCACCCCGAAGCTGGCGGTCACCACACCGACGCCCTCCACGGGCTGACTCCGCAGCGCC TGCCACAGCGCTTCGGCCAACTGCGCCGCCTGCTCCACAGAACTGCCCGGACAGAGCACCACCAGCTCTTCCCCGCCCAGCCGGCAGAACACATCCACCT TGCGCAGGCGCTGGGAGACTCTCTGGCACAGCGTGATCAGCACGGTGTCGCCCGCCTCATGGCCGAAACGGTCGTTGATGTCCTTGAAATGGTCGACGTC GAACATCACCAGCGCCAGCGGCTCGCCGCTGCGTGAGCAGCGCGCCATGCTCAGTTCCAGTTGCTCCTTGAAGTACCGCCGGTTGTGCACCCCTGTCAGC
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| Amino Acid Sequence |
>D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
MFKSLRVLAFATLLPFTLPALAQINTTLPDRVAKALKASKLTNDALSLVMIPLDGPGNPTYFNADVSVNPASTMKLFTTYAALEMLGPTYQWQTEFYTDG QLRDGVLNGNLYLKGGGDPKLNMEKLWLLMRDLRANGVSKVTGDLVLDRSYFNIPQLPVFNDDGGDDNKPFLVGPDSLLVNLKSVRLVVRSDGGKASVLM DPPLANVRIDNQVKVSKAAPCPAWPKLRFNPVTQFDGTSLVATGQIPSGCSAQTYMSLLDHPGYTAGAVRGIWRELGGSIMGKDREGNVPKSATLVARAN SPDVVEVIRDINKFSNNTMARQLFLSLGERFRNSADADDAQAAQRVIRQWLARKGITATHLVMENGSGLSRDERVSAREMAAMLQAAWHSPYAAEYISSL PIVAKDGTMRKRLRGTPMAGEAHVKTGTLNTVRALAGFSRDANGRNWVVVAILNSNRPWGASSILDQVLLDLYSSTRRTGG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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