Strain | Pseudomonas denitrificans ATCC 13867, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CTGGCGCAGCAGGCCACTCTTGCCAGTCATGCAGAACAGGCAGCCCACCGCGCAGCCGACCTGGGTGGACACGCACACGCCGCCGCGCGGCAGCAGCACG CTTTCCACCATCTGCCCGTCGTGCAGTTGCACCAGCAGGCGCTCGGAGCCGTCCGCGCCGGGGTGCCGGGAATGCAGGCGCGCCAGCTGCGCAAGTTCGG CGTCGATGCCCGCCACGCCGTTGCGCACGGAGAGCGGCAGGAAGTCTGCGCTGGCCTGGCGCCGCGTGCCGCTGTCCAGCGCCCTGCCCTGCAGCCAGGC GCGCAGCATCCGGGCGCGGTGCAGGGGCAGCGCTCCGAGGGTGGCGAGACGTTGGTCGAGGTCGGTGAAGTGCATGGGGCGCGCATGCTACCACCGGCGG GGTTGGCGGCGTAGCGCGGGCTGTCGCCGCGCCCGCCACTGGAGCGCCGGGCGCGGCGGTGCTAGGGTCAGCCCTTGCCCATCGCAACAGGATGTTCGCC
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DNA Sequence for Gene |
>H681_14430
|ampC
ATGCGCCTGACCGGCCCGCTCGCACTCAGCTGCTCGCTCACCCTCGCCTGCATTCCCCCGGCCAACGCCGTGGCGCCGGACTTCGATGCCAAGGTGCAGA GGGCCGCCGAGGCAGTGATGCGCGAACACGCTATCGCGGGGCTGGCGATCGGCGTCACCGACAACGGCGAGCAGCGCTTCTACAACTTCGGCCTGGCGTC GAAGGAAAGCCGCCAGCCGGTCACCAGCGATACCCTGTTCGAGGTCGGCTCGATCAGCAAGACCTTCACCGTGACCCTCGCCGCCTTCGCCCAGGCCGCC GGCAAGCTGTCGCTGAAGGCGAGCCCCACCCGCTATATGCCGGAGCTGCGCGGCAGCGCGCTGGACAAGGTCAGCCTGATCAACCTCGCCACCCATACCG CCGGCGGCTTCCCGTTGCAGATTCCCGAGGCGGTGCAAACGTCCGCGCAGCTCACCGAGTACTACAACGACTGGCAGCCGCAGTACCTCGCCGGCACCCA GCGCACCTACGCCAACCCGAGCATCGCCCTGGTCGGCTTCGCCACCGAGCGGGCACTCGACGTGCCGTTCAAGACGGCGATGCAGCGCAACGTGTTCGCC CCGCTGGGCCTCTCCAACACCCATATCGAGGTGCCGGTGACCCGCCAGGGCTACTACGCCCAGGGCTACGACAAGAACGACGCGCCGGTGCGGCTCAACC CCGACGTGCTGGCCGACGTGGCCTACGGCGTACGCAGCAGCAGCCGCGACCTGCTGCACTTCGTCGAGATCCAGCTGGGCCGGGTCAAGCCGGGGGAGAA GCTGCAGGCCGCGCTCGACGCCACCCGCACCGGCTACTACAAGGTCGGCCCGATGACCCAGGACCTGATCTGGGAGCAGTACGCCTACCCGCCGAAGCTG GCCGAGCTGCAGCAGTACAACGGCAGCCAGATGATCCAGGGCAACCAGGTGGTCACCGCCCTCACCCCACCGTTGCCGCCGCAGCAGAAGGTCTGGGTGA ACAAGACCGGCGCCACCGCAGGCTTCGGCGCCTACGTGGCGTTCGTGCCGGCGAAACAGCGCGGCATCGTGCTGCTCGCCAACCGCAACTATCCCAACGA GGCGCGGGTGAAGCTGGCCTGGGACATTCTTTCATGGTTGGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GTCGGTACGCCCCCCTGCAGGAGCGAGCTTGCTCGCGAACCACCCGACACCGATGCCGTCGGCAAATCTGTTCGCGAGCAGGCTCGCTCCTGCGAAGAGC CCCGCCACAATGCCGGCTCGGTGATTCTCAGTCGCTTGCCAGCTCGAACAACTGCCAGCGCACCGAGCTGACGCCTTTCTCCAGGCTGATGCGGCTGACC ATGCGCTCCAGCTGGCCGGCGGCGCCGTGGCCGCCGAGCAGTTCGGCACGTACTTCCAGTTTCGCCGGGTTCGGCTGGTCCTCGCTGTGCAGCGACTGCA GGCGCAGTTCGCCACCGTCCAGGCTGTGCAGCATCAGGCTGCGCACCTGGATCTCGTCCTCGGCGCGGCAGACGATGGCCACCCCGTAGCGCTGCTCCGC CTCGCTGGCCGGCAGCATGTCCTGGTGGTTCAGGCGCGAAGCGATGTCGCGCAGCAGGATATTGGCGCACAGCACCACCACGCTGCCCAGCGCCGCCTCC
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Amino Acid Sequence |
>beta-lactamase/D-alanine carboxypeptidase
MRLTGPLALSCSLTLACIPPANAVAPDFDAKVQRAAEAVMREHAIAGLAIGVTDNGEQRFYNFGLASKESRQPVTSDTLFEVGSISKTFTVTLAAFAQAA GKLSLKASPTRYMPELRGSALDKVSLINLATHTAGGFPLQIPEAVQTSAQLTEYYNDWQPQYLAGTQRTYANPSIALVGFATERALDVPFKTAMQRNVFA PLGLSNTHIEVPVTRQGYYAQGYDKNDAPVRLNPDVLADVAYGVRSSSRDLLHFVEIQLGRVKPGEKLQAALDATRTGYYKVGPMTQDLIWEQYAYPPKL AELQQYNGSQMIQGNQVVTALTPPLPPQQKVWVNKTGATAGFGAYVAFVPAKQRGIVLLANRNYPNEARVKLAWDILSWLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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