Pseudomonas denitrificans ATCC 13867, H681_13740
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas denitrificans ATCC 13867, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGGTGACTTGCCGGTCCTCGTTAGACCTTCGTGTAGTAGTCTAAAAAAACACTACAAAACGTTTGACGAACGCTCGTTTGAAAGGGCATGATGGCCTCGC TCCCGCTAACCAGAGGGCCTCAAAGCCCTCCGGATCGCGCCAGCGGCCCACCCGTCGCGCCGGTCCGTGTTGTTAAGCCCACAAGGCGGATCGACGAGGT TGCGACTGGCAAGAGGTTGTCCTGAGGGACGGGGAAGCAAGCCTGAGTAACAGCACGAAGTGACGGATTCAGCCGTCCACCATCGCCCAACGGCTGCCAC GAGCCGGCAAGCGATTCTGGATGTCACCGCTGCAGTCACGAGTCTGTACGCCGCGCCACCCCACTCCTCCAGCGTCACTCCTTCTTTCGGTCGCCCCTTC GCCATCCCGCGGCGAGCAACCCGCAGCCAATTCCGTTTCGATACAGGTCTTGAGTGGGTAAGTCGGTGCTCAACCACACACATACTTTGAAGGATTGACC
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| DNA Sequence for Gene |
>H681_13740
ATGTCAGCTTATCAAAACGACATCAAAGCCGTTGCCGCCCTGAAAGAGAAAGCCGGCAACAGCTGGAGCGCTATCAACCCCGAGTCGGTTGCCCGCATGC GCGCTCAGAACCGCTTCAAGACTGGTCTGGACATCGCCAAGTACACTGCGGCCATCATGCGCAAGGACATGGCCGAGTATGACGCCGACTCCTCCGTCTA TACCCAGTCGCTGGGTTGCTGGCATGGCTTCATCGGTCAGCAGAAGCTGATCTCGATCAAGAAGCACCTGAAGACCACCAACAAGCGCTACCTCTACCTG TCCGGCTGGATGGTTGCCGCGCTGCGTTCCGACTTCGGCCCGCTGCCCGACCAGTCCATGCACGAGAAAACCGCAGTATCGGGCCTGATCGAAGAGCTCT ACACGTTCCTGCGCCAGGCTGACGCCCGCGAACTGGATCTGCTCTTCACCGCCCTGGACAGCGCTCGCGCCGCTGGCGACAAGGCCAAGCAGGACGAGAT CCAGGCTCAGATCGACGGCTACGAAACCCACGTCGTACCGATCATCGCCGATATCGACGCCGGCTTCGGCAACCCGGAAGCCACCTACCTGCTGGCCAAG CGCATGATCGAAGCAGGCGCTTGCTGCATCCAGATCGAAAACCAGGTTTCCGATGAGAAGCAGTGCGGCCACCAGGACGGTAAAGTGACCGTTCCGCACG AAGACTTCCTCGCCAAGATCAATGCTGTTCGCTACGCCTTCCTCGAGCTGGGCGTTGACGATGGCGTGATCGTTGCCCGCACCGACTCCCTGGGTGCCGG CCTGACCAAGCAGATCGCCGTGACCAAGCAGCCGGGCGACCTGGGCGACCAGTACAACTCCTTCCTTGACTGCGACGAGATCAGCGCCGCCGAGCTGCAG AACGGCGACGTGGTAATCAACCGCGGCGGCAAGCTGCTGCGTCCCAAGCGCCTGGCTTCCAACCTGTTCCAGTTCCGCAAGGGCACCGGCGAAGACCGTT GCGTCCTGGACTGCATCACCTCGCTGCAGAACGGCGCCGACCTGCTGTGGATCGAAACCGAGAAGCCGCACGTTGGCCAGATCAAGGGCATGGTTGACCG CATCCGCGAAGTCATCCCGAACGCCAAGCTGGTTTACAACAACAGCCCGTCCTTCAACTGGACCCTGAACTTCCGCCAGCAGGTGTTCGATGCGTTCGTC GCCGAAGGCAAGGACGTTTCCGCCTACGACCGCGCCAAGCTGATGAGCGTCGAGTACGACGAGACCGAACTGGCCCAGGTTGCTGACGAGAAGATCCGTA CCTTCCAGCGTGACGGTTCCGCCCACGCCGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCACACCGCCGCGCTGTCCACCGACAACCTGGCCAA GGGCTACTTCGCCGACCAGGGCATGCTGGCCTACGTGAAGGGTGTTCAGCGTCAGGAATTGCGTCAGGGCATCGCCTGCGTCAAGCACCAGAACATGGCT GGCTCGGACATCGGCGACAACCACAAAGAGTACTTCGCTGGCGAAGCCGCTCTGAAAGCCTCGGGTAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAACCCGGTTCGACCGGCCCCTCGGGGCCGGGAGGCAGCGCAAGACCCCGGCATCCGCCGGGGTTTTGTTTTTCCGCTTGGCCCAATTGCCAGCCACCC TCCTCCGGCCCGCCAAGGGCAGATCCGCATCGACATGCCAGCCTCGGACTTCCCTCCATCGAGAACTGGAAAGTCCATGCCCAAGCGCAACCGCCTCGCC CTCGCCGCCCACCTGATCCAGCGCCTGCCACGCCTCCTTCACGAACCGCTGCTCAGTCGCCTGTTCTGCTCCCAGGTGCGCTTCGCCGGTACCGCCAAGG TGCGCATCCAGAAGCTGTCCGGCGACGAAGTCCGAATGAGCCTGGCCAACCATCGTCAAGTGCGGAATCACATTGGCGGCGTGCATGCCGCCGCTACGGC GCTGCTCGCCGAATCCGCCAGCGGCTGCATGGTCGGCATGAACCTGCCCGACCACAAACTGCCACTGATCAAGACCCTCAAGGTCGACTACCTGCGCCGC
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQNDIKAVAALKEKAGNSWSAINPESVARMRAQNRFKTGLDIAKYTAAIMRKDMAEYDADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSDFGPLPDQSMHEKTAVSGLIEELYTFLRQADARELDLLFTALDSARAAGDKAKQDEIQAQIDGYETHVVPIIADIDAGFGNPEATYLLAK RMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKINAVRYAFLELGVDDGVIVARTDSLGAGLTKQIAVTKQPGDLGDQYNSFLDCDEISAAELQ NGDVVINRGGKLLRPKRLASNLFQFRKGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQIKGMVDRIREVIPNAKLVYNNSPSFNWTLNFRQQVFDAFV AEGKDVSAYDRAKLMSVEYDETELAQVADEKIRTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADQGMLAYVKGVQRQELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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