Strain | Pseudomonas denitrificans ATCC 13867, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
ATCGTCAAGGCCATGCTCGCCTGCCGCGAGCGCAGCACCTTCATCCCGATCCTGGCCAACAGCTTCGCCCGCCACACCAGCGAGATCCTGGTGGCCCACG CCGAGCGCGAGCACGGCGAGTCGAAGTACGACTTCATGCGCCTGATCAACCTGATGTTCGACCTGGTCACCTGCATGACCACCACGCCGCTGCGCCTGCT GTCGCTGGTGGGCGGCACGATGGCGCTGGCCGGCTTCTGCTTCGCCCTGCTGCTGCTCGCCCTGCGCCTGGTCTTCGGCGCCGCCTGGGCCGGCCACGGC GTGTTCGTGCTGTTCGCCGTGCTGTTCACCTTCACCGGCGTGCAACTGGTGGGCATGGGCCTGCTCGGCGAGTACCTGGGCCGCATGTACAACGACGTGC GCGCCCGCCCGCGCTTCTTCATCGAGCGCGTCGTCCGCCCACGGGCCGCGCTCGAAGCCCGCACAACCACCCCGTCTTCCTCTCTCGAGTCCCTCCAGCC
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DNA Sequence for Gene |
>H681_05040
ATGACCCAGCAGACCATCGTCTTCGCCTACCACGACATCGGCTGTACCGGCATCGAAGCCCTGCTCGCCGCCGGCTACCGGATCGACGCCGTCTTCACCC ATGCCGACGATCCGCAGGAAAACCGCTTCTACGGTTCCGTCGCGCAGCTCTGCGCACGCCACGGCATCCCCGTGCATGCCCCGGAAGACGTCAACCACCC GCTGTGGATCGCCCGCATCCGCGAGCTGCAGCCGCAGTACATCTTCTCCTTCTACTACCGCCACCTGCTCAGCGAAGAGCTGCTGGCCTGCGCCGCCAAG GGCGCCTACAACCTGCATGGCTCGCTGCTGCCGCGCTACCGGGGCCGCGCTCCGGCCAACTGGGTGCTGGTCAACGGCGAGACCGAGACCGGCGTGACCC TGCACCGCATGGTCACGCGCCCCGACGCCGGCGCCATCCTCGCCCAGCAGCGCGTGGCGATCGCTGAGGACGACACCGCCCTGATCCTCCACGGCAAGCT GCGCCAGGCGTCCCGCGAACTGCTCGACGACGCGCTGGCGAAACTGGCCAGGGGCGAGCTGAGCGAAGTCGCCCAGGACGAGTCCCGCGCCAGCTACTTC GGCCGCCGCACCCCGGCCGACGGCGCCATCGACTGGCAGCGTCCGGCCCGCGAACTGCACAACCTGGTCCGCGCGGTGACCCAGCCCTACCCCGGCGCCT TCGCCCCCGTGGGCGAGCGCAAGCTGATCGTCTGGAGCTCCCGCGTCGCCAGCGGCAATGGCGGCCAGGCGCCCGGCTCGGTGCTCAGCGTCGATCCGCT GCGCATCGCCTGCGGCGAAGACGCCCTGGAAATCCGCTCCGGCCAGCAGGGCGACGCCGGCCTGTTCCTTGCCGGTCCGCAACTGGCCCGCGAAATGGGC CTGGTGGAAGGCTCGCGCCTGCACGGCGCCGCTCGCAAGGCCAAGCGCAAGACCCGCGTGCTGATCCTCGGCGTCAACGGCTTCATCGGCAACCACCTCT CCGAGCGCCTGCTGCGCGATGGCGACTACGAGGTCTACGGCCTGGACATCGGCTCCGACGCCATCGAGCGCCTGCGCACCAACCCGGATTTCCACTTCGT CGAAGGCGACATCAGCATCCACACCGAGTGGATCGAGTACCACATCAAGAAGTGCGACGTGGTCCTGCCGCTGGTGGCCATCGCCACGCCCATCGAATAC ACCCGCAATCCGCTGCGCGTGTTCGAGCTGGACTTCGAGGAAAACCTCAAGCTGGTCCGCTACTGCGTGAAGTACGGCAAGCGCGTGATCTTCCCCTCGA CCTCCGAGGTGTACGGCATGTGCTCCGACGCCAACTTCGACGAGGACAAGTCCAACCTCATCGTCGGCCCGATCAACAAGCAGCGCTGGATCTACTCGGT CTCCAAGCAACTGCTCGACCGGGTCATCTGGGCCTACGGGCAGAAGGGCCTGAAGTTCACGCTGTTCCGTCCGTTCAACTGGATGGGGCCGCGCCTGGAC CGTCTGGACTCGGCCCGTATTGGCAGCTCGCGCGCCATCACCCAACTGATCCTGCACCTGGTGGAAGGCACGCCGATCCGCCTGGTCGACGGCGGCGCGC AGAAGCGCTGCTTCACCGACGTGGACGACGGCATCGAAGCACTGGCGCGCATCATCGACAACGAGGGCAGCCGCTGCGACGGGCAGATCGTCAACATCGG CAACCCGGACAACGAAGCCAGCATCCGCCAGCTCGGCGAAGAGCTGCTGCGCCAGTTCGAGGCCCACCCGCTGCGCGACCAGTTCCCGCCCTTCGCCGGC TTCCGCGAAGTGGAAAGCCGCAGCTTCTATGGCGACGGCTACCAGGACGTGTCGCACCGCAAGCCGAGCATCAGGAACGCCCGCCGCCTGCTGGACTGGG AACCCACGGTCGAGCTGTCCGAGACCATCGGCAAGACGCTGGACTTCTTCCTGCGCGAAGCCCTCGCCGAGCGCTCCGGCGGCGCACCGCACGCCGTGCC GCTGAAAAGCATCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGCGCGCGGGACTGCGTATCGATGTGGACACCTACCGCGGCACCCGTGAAGGGGTACCGCGGCTGCTGGATATGCTCGACGAAGCCGGCGTGAAGGCGAC CTTCTTCTTCAGCGTCGGCCCGGACAACATGGGCCGCCACCTGTGGCGCCTGGTCCGCCCGCGGTTCCTGTGGAAGATGCTGCGCTCCAATGCCGCCGGG CTCTATGGCTGGGACATCCTGCTGGCCGGCACCGCCTGGCCGGGCAAGCCCATCGGCCGCGACCTCGGCCACCTGATGCGGCGCGCCCAGGACGCCGGCC ACGAAGTCGGCCTGCACGCCTGGGACCACCACGGCTGGCAGGCCAACGCCGGACGCTGGAGCGCGCAGCAACTGGAGCAGCAGATCCGCCGTGGCGTGGA CACCCTCGCCGACATCCTCGGCAACCCGGTGGAGTGCTCGGCGGTGGCCGGCTGGCGCGCCGACGAGCGCACCGTGGAAGCCAAGGAGCGCTTCGGCTTT
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Amino Acid Sequence |
>bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
MTQQTIVFAYHDIGCTGIEALLAAGYRIDAVFTHADDPQENRFYGSVAQLCARHGIPVHAPEDVNHPLWIARIRELQPQYIFSFYYRHLLSEELLACAAK GAYNLHGSLLPRYRGRAPANWVLVNGETETGVTLHRMVTRPDAGAILAQQRVAIAEDDTALILHGKLRQASRELLDDALAKLARGELSEVAQDESRASYF GRRTPADGAIDWQRPARELHNLVRAVTQPYPGAFAPVGERKLIVWSSRVASGNGGQAPGSVLSVDPLRIACGEDALEIRSGQQGDAGLFLAGPQLAREMG LVEGSRLHGAARKAKRKTRVLILGVNGFIGNHLSERLLRDGDYEVYGLDIGSDAIERLRTNPDFHFVEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEY TRNPLRVFELDFEENLKLVRYCVKYGKRVIFPSTSEVYGMCSDANFDEDKSNLIVGPINKQRWIYSVSKQLLDRVIWAYGQKGLKFTLFRPFNWMGPRLD RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNEGSRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRDQFPPFAG FREVESRSFYGDGYQDVSHRKPSIRNARRLLDWEPTVELSETIGKTLDFFLREALAERSGGAPHAVPLKSIA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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