Pseudomonas denitrificans ATCC 13867, H681_05025
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:1901505 | carbohydrate derivative transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:MF_01869
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30561
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0009103 | lipopolysaccharide biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:MF_01869
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30561
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pdr01503 | Cationic antimicrobial peptide (CAMP) resistance | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Hamap | MF_01869 | Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. | IPR022883 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE | 1 | 114 | 29.244183 |
| PANTHER | PTHR30561 | SMR FAMILY PROTON-DEPENDENT DRUG EFFLUX TRANSPORTER SUGE | IPR000390 | Small drug/metabolite transporter protein family | 5 | 113 | 4.0E-21 |
| SUPERFAMILY | SSF103481 | Multidrug resistance efflux transporter EmrE | - | - | 31 | 113 | 1.57E-14 |
| Pfam | PF00892 | EamA-like transporter family | IPR000620 | EamA domain | 5 | 110 | 2.3E-10 |
| Gene3D | G3DSA:1.10.3730.20 | - | - | - | 2 | 114 | 1.3E-20 |
| FunFam | G3DSA:1.10.3730.20:FF:000002 | Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE | - | - | 1 | 113 | 8.8E-35 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.