Pseudomonas denitrificans ATCC 13867, H681_00295

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0001510 RNA methylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR22807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00563
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008649 rRNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00563
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01189
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd02440 AdoMet_MTases - - 248 372 2.25408E-7
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 367 383 8.9E-29
FunFam G3DSA:3.30.70.1170:FF:000002 Ribosomal RNA small subunit methyltransferase B - - 172 229 1.5E-20
Pfam PF01029 NusB family IPR006027 NusB/RsmB/TIM44 4 125 7.6E-21
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 138 433 6.54E-70
Gene3D G3DSA:3.30.70.1170 Sun protein; domain 3 - - 172 229 5.2E-22
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 230 433 3.8E-63
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 317 329 8.9E-29
FunFam G3DSA:3.40.50.150:FF:000022 Ribosomal RNA small subunit methyltransferase B - - 233 433 2.0E-71
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 221 235 8.9E-29
Coils Coil Coil - - 276 296 -
Pfam PF01189 16S rRNA methyltransferase RsmB/F IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type 240 430 1.5E-60
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 415 432 8.9E-29
Gene3D G3DSA:1.10.940.10 - IPR035926 NusB-like superfamily 1 143 2.0E-32
SUPERFAMILY SSF48013 NusB-like IPR035926 NusB-like superfamily 4 148 7.98E-34
NCBIfam TIGR00563 JCVI: 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB IPR004573 rRNA small subunit methyltransferase B 9 432 3.2E-120
Gene3D G3DSA:1.10.287.730 Helix hairpin bin - - 145 171 2.1E-10
PANTHER PTHR22807 NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING IPR023267 RNA (C5-cytosine) methyltransferase 123 435 6.0E-63
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 250 260 8.9E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.