Pseudomonas poae RE_1-1-14, H045_20405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas poae RE*1-1-14, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAAAGTTCTCAGAAGTTCATCGCGCGCAACCGCGCGCCTCGGGTGCAGATCGAGTACGACGTCGAGCTTTACGGCGCCGAGAAAAAGGTCCAGCTGCCCT TCGTGATGGGCGTGATGGCCGACCTCGCCGGCAAGCCTGCCGAGCCTCTGGCGGCGGTCGCCGACCGCAAGTTCCTCGAAGTGGACGCCGACAACTTCGA CTCGCGTCTCAAGGCCATGCAGCCGCGCGTGGCGTTCCATATCCCCAACGAATTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAAAGCATG GACGACTTCAGCCCCGCCGCCGTGGCGCGCAAGGTCGACTCGCTGAACCAACTGCTCGAAGCCCGCACCCAACTGGCCAACCTGCTGACCTACATGGACG GCAAGACCGGCGCTGAAGAAATCATCATGAAGGCGATCAAGGACCCGGCACTGCTCCAGGCACTTGCCAGCGCGCCGAAGCCTGCAGGGGATCAGTAATC
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| DNA Sequence for Gene |
>H045_20405
ATGACCGACACTACCGTTCGCGAAGGCGCGCTGAATCTGGGCGCCACCGAAGAAACCAGCGAGTTCGCATCCCTGCTGATGCAGGAATTCAAGCCCAAGA CCGAGCGTGCCCGCGAAGCCGTGGAAACCGCCGTGCGCACCCTGGCCGAACAGGCCCTGGCGCAAACCGATCTGGTGTCCAATGACGCGATCAAGTCGAT CGAATCGATCATCGCCGCCATCGACGCCAAGCTCACCGCCCAGGTCAACCAGATCATCCACCACCAGGACTTCCAGCAACTGGAAAGCGCCTGGCGTGGC CTGCACTACCTGGTCAACAACACCGAGAGCGATGAGCAGCTGAAAATTCGCGTGCTCAACATCTCCAAGCCCGAACTGCACAAGACCCTGAAGAAATTCA AGGGCACCGCGTGGGACCAGAGCCCGATCTTCAAGAAGATGTATGAAGAAGAATACGGTCAGTTCGGCGGCGAACCTTACGGCTGTCTGGTGGGCGACTA CTACTTCGATCAGTCGCCACCGGACGTGGAACTGCTGGGCGAGCTGTCGAAAGTCTGCGCTGCCATGCACTCGCCGTTCATCGCTGCGGCCTCGCCGACC GTGATGGGCATGGGCTCGTGGCAGGAGCTGTCGAACCCGCGTGATCTGACCAAGATCTTCACCACTCCGGAATACGCCGGCTGGCGCTCGCTGCGTGAAT CGGAAGACTCGCGCTACATCGGCCTGACCATGCCGCGCTTCCTCGCGCGCCTGCCGTACGGCGCCAAGACCGACCCGGTGGAGGCGTTCGCCTTCGAAGA AAACACCGACGGCGCGGACAGCTCCAAGTACACTTGGGCCAACGCCGCGTACGCGATGGCGGTGAACATCAACCGTTCGTTCAAACACTACGGCTGGTGC TCGCGCATCCGTGGTATCGAGTCCGGCGGCGAAGTGGAAAACCTGCCGGCGCACACGTTCCCGACCGATGACGGCGGCGTGGACATGAAGTGCCCGACCG AAATCGCCATCAGCGACCGCCGTGAAGCGGAGCTGGCGAAAAACGGTTTCATGCCGCTGCTGCACAAGAAAAACACCGACTTCGCCGCGTTCATCGGCGC CCAGTCATTGCAGAAGCCAGCCGAATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCTGCGCGCCTGCCGTACCTGTTCGCCACCTGCCGTTTC GCGCACTACTTGAAGTGCATCGTTCGCGACAAGATCGGTTCCTTCAAAGAGAAGGACGAGATGCAGCGCTGGTTGCAGGACTGGATCCTCAACTACGTCG ACGGCGACCCGGCGCACTCCACCGAAACCACCAAGGCCCAGCACCCATTGGCTGCCGCCGAAGTGATCGTGGAAGAAGTGGAAGGCAACCCGGGGTACTA CAACTCCAAGTTCTACCTGCGCCCGCACTACCAGCTTGAAGGGCTGACGGTGTCGTTGCGTCTGGTCTCGAAGCTGCCTTCGGCGAAAAGCGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTAACGGTTGAACCGGCTCTTCTGTGGGAGCAGGGCTTGCCCGCGATGCAGACAACTTGGTTTGTCAGTCAGACCGCGGTGATGCAATCGCAGGCGAGCC AGCTCCCACAGAGAAGCACTGCCCCGTTGGGGCATAACAAATTCAGTGGCCCGTGCCACACAGGGAGAAATCATGGCTGTTGATATTTTCATCAAGATCG GCGACATCAAGGGCGAGTCCATGGACAAGGCCCACAAGGACGAAATCGACGTGCTGAACTGGAGCTGGGGCATGGCCCAGTCCGGCAACATGCACGTGGG CGGTGGTGGCGGCGCGGGCAAGGTGAATATCCAGGACCTGTCGCTGACCAAGTACGTCGACAAGGCCTCGCCCAACCTGATGATGCACTGCGCCAGCGGC AAGCACATCGACAAGGTCAAGCTGACCGTGCGCAAGGCCGGTGGTGAAAGCCAGGTCGAGTACATGGTGATCAACCTGGAAGAAGTGCTGGTCACGTCCC
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| Amino Acid Sequence |
>type VI secretion protein TssC1
MTDTTVREGALNLGATEETSEFASLLMQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKLTAQVNQIIHHQDFQQLESAWRG LHYLVNNTESDEQLKIRVLNISKPELHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGELSKVCAAMHSPFIAAASPT VMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHYGWC SRIRGIESGGEVENLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF AHYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEEVEGNPGYYNSKFYLRPHYQLEGLTVSLRLVSKLPSAKSA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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