Pseudomonas poae RE_1-1-14, H045_07645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas poae RE*1-1-14, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCCTGGTGCTGGCCGCCCAGTACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTGCCGATGACCCTGTTGTCGGCGATCACCGGGGTGA TCATCTCGGGCAGCGACAACAACATCTTTACCCAGATCGGTTTGATCGTACTGGTGGGCCTGGCGTGCAAGAACGCGATTCTGATCGTCGAATTCGCCAA GGACAAACAGGCGGAGGGGCTTGATCCGCTGGCTGCGGTACTCGAAGCCTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCGTTCGCTTTCATCATG GGTGTGGTGCCCCTGGTGCTGTCCAGCGGTGCCGGTGCCGAGATGCGCCATGCCATGGGCGTGGCGGTGTTCTCCGGGATGATCGGGGTGACTTTCTTCG GCCTGTTGCTGACGCCGGTGTTCTACGTACTCATTCGTCGCTATGTGGAGCGCAGCCAGGCGCGCAAAGCGGCCAAGGCCTTGAAGCTGGAGACACAGCC
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| DNA Sequence for Gene |
>H045_07645
ATGAGCGTGAAAATCTTCCTGCCGAGCCTGCTGGTATTGGCGCTCGCCGCGTGTGCCGTCGGCCCGGACTACAAAACCCAGACCCCGGAGGCGGCGAACA TCACCGCTGCCGCGGATGCAAAACAATACGATCACGCCAAATTTGAAGGCATCTGGTGGCAGCAGTTCGAGGACCCGACGCTCAATCAGTTGGTCACTCA ATCGCTGCAAGGCAACCGTGACCTGCGCGTGGCGTTTGCCCGTCTGCGGGCGGCCCGGGCGATTCGTGATGACGCCAGCAATGACGCCATGCCAACCATC ACCAGTCGCGCCAGCAGTGATTTGGCCAAAGGGCAGATCCCTGGCCAGACCACCCGGCGGGTCAACAGCGAGCGCTATGACCTGGGCCTGGACATGGCCT GGGAGCTGGACCTGTTCGGCCGCATCCAGCGCAACCTGGAGGCCAGCGACGCCGACCAGCAAGCGGCCGAGGCCGACCTTTACCAGTTGCAAGTGAGCAT GATTGCCGAACTGGTGGATGCCTACGGCCAGCTGCGCGGTGCGCAACTGCGCGAGCGTATTGCCTTGGACAACCTGAAGAACCAGCAGGATTCACGCAGC ATCACCGTAAGCCTGCGCGATGCCGGCGTGGGCGACCAGCTCGATGTGGAGCGCGCCGACGCACGTCTGGCCTCGGTGGAAGCCAGCGTGCCGCAACTGC AGGCCGAACAGGTGCGCGAGCGCAACCGCATCGCCACCCTGCTCGGCCAGCGCCCGGACAAGCTCAGCGTCGACCTGAGCCCCAAAGACCTGCCCGCGAT TGCCAAAGCGCTGCCGATTGGCGACCCGGGGCAACTGCTGCAACGGCGTCCGGACATCCTCAGCGCCGAGCGCAAGCTGGCCGCCGCCACCGCCCGCATC GGCGTGGCCAAGGCCGACCTGTTCCCACGGGTGAGCCTCAGCGGCTTCCTCGGCTTTACCGCCGGGCGCGGTTCGCAGATCGGCTCGTCGGCAGCCAATG CCTGGGCGCTCGGCCCGAGCATTACCTGGGCGGCGTTCGACCTGGGCAGCGTGCGTGCGCGCTTGCGCGGCGCGGACGCCGAGGCCGATGGCGCGCTGGC GACCTATGAGCAACAGGTGCTGCTGGCGTTGGAAGAATCGGAAAATGCTTTCAGTGATTACGGCAAACGCCAACAGCGCCTGCTGTCGTTGATCCGTCAG AGTGAATCCAGCCGCGCCGCCGCCGACCTCGCGGCGATTCGTTATCGCGAAGGCACCGTGGACTTTTTGGTATTGCTTGATGCCCAACGCGAACGCCTGG CCGCCGAAGACGCCCAGGCTCAGGCCGAAGTGGACCTGTATCGCGGCATCGTGGCGATCTACAAGGCGTTGGGCGGTGGCTGGCAGCCGAATACGGTCAT CGCGACCGCGAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGTAAAGAGCTCCTTTGGTTGGTCGCATCCAGCCAATTTTGGCCCCGTGGTCCATTCGGTCACGGGGCCTTTTTTTGGGTTTGAGAAAGAAGCTACGTGG CAAGTTATAACTTCTGTCAGACACTTCTCAAATTAAACAATCAACTTAATGTGGGTCACAGGAGTGTCGATAACGGTATGTACAGTCAATTCCCGCGAGG CGACGCAGATGGACATGATGCTGACAATACCCAATACACTGTCAAAGCAATCAGACGGTTTTTTGATCAAGAACCCGACCAAGACCACGAATGTGTACAC CTTTACTGAGGAAGCCAAAGCCGCTGACGAACTGAAGTTGTCGCAACAGGATCAGATTGCGGAGCTGAAGGCGTTTCTGAAGGATTACGACATGACGTCG ATCAGTACCGATGAGCTTAAAGTGGTGGGGAGACGGTTATATGAAAGTGGCGTAATCGACACAAATGCTTTCGGTATTTTCATATCCGGGGACGGCGGTT
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| Amino Acid Sequence |
>outer membrane component of multidrug efflux system
MSVKIFLPSLLVLALAACAVGPDYKTQTPEAANITAAADAKQYDHAKFEGIWWQQFEDPTLNQLVTQSLQGNRDLRVAFARLRAARAIRDDASNDAMPTI TSRASSDLAKGQIPGQTTRRVNSERYDLGLDMAWELDLFGRIQRNLEASDADQQAAEADLYQLQVSMIAELVDAYGQLRGAQLRERIALDNLKNQQDSRS ITVSLRDAGVGDQLDVERADARLASVEASVPQLQAEQVRERNRIATLLGQRPDKLSVDLSPKDLPAIAKALPIGDPGQLLQRRPDILSAERKLAAATARI GVAKADLFPRVSLSGFLGFTAGRGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGADAEADGALATYEQQVLLALEESENAFSDYGKRQQRLLSLIRQ SESSRAAADLAAIRYREGTVDFLVLLDAQRERLAAEDAQAQAEVDLYRGIVAIYKALGGGWQPNTVIATAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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