Pseudomonas poae RE_1-1-14, H045_06825
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas poae RE*1-1-14, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCAAAGCCTGCGCACCTGCGACGAGCTGAAAAACGAATCGAACCTTGCGCCTTCCGAAGCCCGCCTGCGCAGTGCCAACCCCCTGCGCCATTGCTCCG ACGGTAAAGCGGCATTGGCGGCGTTGCTGGGTATGAACGAGTGGGGGCAATTGCCGGCCGAGGCCGCCCTGGTCCAGGCCCACCGGGATCTGCAATCCCA TCAGGTAGCCCTGCTGACAGCGTGTCGCACCGCACTGCGCAATGGGTACCGGGTATTCGCGCCCAGCCACTTGATGTTGTGCTTCGAGCGCCAGGAAAAA GCTCCCTGGTTCAATGCCGACGGGGCGCACTGGCGCGCCTACCAACGCCATTATCAACGCCTGATCGAGGAAGAACCGTTGAGCGAGCGCCTGTTGGGCA ATGACTTTGCCAATGCCTACGAAGAGCAGGTTCGCCTGATTTCCACCCTTCATGCGGCTTGCCCGGGATGATATGCATGTACAGAGCCAACCTTGTATCA
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| DNA Sequence for Gene |
>H045_06825
ATGCTGGTGTTACTCGGCGTGTTGGCCGGGTGCAGCGCACTGTCGCCTTTTTCGACCCTGACCAAAGTTGACCTGACAGTGACGGCCAATGAGCGGGTCA ATCCCGATCTGCACGGTCGTCCCTCTCCGGTGGTCATGCAACTGATCGAGCTGCGCCACCCCGCAGCGTTCGAAAACGCGGACTTCTTCAGCCTGTATGG GCGTGCCGAGCAGACGCTGCCCAAGGACTGGGTAAGCGGCGAGGAACTGGAAATGCGCCCCGGCGAACGCCTGGCGCTCAAGCTCAGCGTCGGGCCGCAC AGTCGCTATGTGGGAGTGCTCGCAGCCTATCGCGACTTGCCTCACGTGCAGTGGCGGTTGTTAGTGCCCGTGACGCCTGGCCGACTGACCCGCGCCGACC TGATGCTGGACGAGGACGGCATACGTCTGGCCAACCTGTCCGCCGATGCGCTGGAGAATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATGCAGGCTCATAATGTCATCTGGCAGGAAGGCATGCTGTTGCGGCCCCAGCACCTGCAGCATCAGGACCGCTATTACAACCAGCAACTCAATCGCACC CGTTTGTTGGGCAGTGATGCCTGGGGGTTTCTCAGCCTTGAAGTGGATGTGCAGTACCTCAAGCTGGGCAAGTTTGTCGTGACCCAGGCCAGTGGCGTGC TGCCCGACGGCAGCCTGTTCGAGCTGAGCAGCGCCATGGAACCGCTGGTGCTGCAGGTGCCGGCCAACGCCGGCAGACAGGGTATCTACCTGGCATTACC GTTGGCGATCGGCAATCAGATCGAAGCCCGTAAACCCGAGCAGGTCGATGTGGTGGCTCGCTATGTCAGCTCCACCACGGAGGTCGGCGATTCGAATGCG GGGAGCGACTCGCGCTGCCAGATCAGCTGTGGACGCCCGGATCTGCGTCTGTTGCTGGGCGAGCAGCACAGCGACCAGACCTTCGTGACGCTTCAGGTCG
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| Amino Acid Sequence |
>type VI secretion lipoprotein TssJ2
MLVLLGVLAGCSALSPFSTLTKVDLTVTANERVNPDLHGRPSPVVMQLIELRHPAAFENADFFSLYGRAEQTLPKDWVSGEELEMRPGERLALKLSVGPH SRYVGVLAAYRDLPHVQWRLLVPVTPGRLTRADLMLDEDGIRLANLSADALEN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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