Pseudomonas poae RE_1-1-14, H045_06795
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas poae RE*1-1-14, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGTATCGCGTCAATCTGAGTGTGCGGCCTCACTTCAAATATATGGGGGCGGACTTCACGCTTTCCCTTGTCGGCAAGCTCGACAAAGAATGAACAGG CACCCGGGGATGACCTGTCACCACAGCCTTTTCGAGCGCCTCGAAGGCCACACATCCGCTCGGTCGGGCGGCATGGCCTCGGTGGCTGCCCACTTGGGGA AAATGCTCAGCACGCGCGCCGGCAGTGTCCAGACTGCAGGCGATTATGGCCTGCCGGATCTCAATGACATGCGCCAGAGCCTGCATGAGTCCTTGAGCCA GTCGCGCCTCTCGATCGAGCGCTTTATCCAGGCCTACGAACCACGCCTGACGAATGTTCGTGTCAGGGCGCTGCCGCGTGACCGCGATCCCCTGGTCCTG GCATTTTCCATAGCAGCGATGCTTGTGATTGACGGTGAGGCCCGGGCCGTGGCTTTCAGCGCGCACCTGGGCGGCGGCGGGCAGGTGGAGGTCGCGCCGG
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| DNA Sequence for Gene |
>H045_06795
ATGACCTTTAATCGCTATTACCAGAGTGAACTCAGCGCCCTGCGTCAGCTTGGGCGACGTTTCTCGGAGCGTAATCCGGCGTTGGCACCGTTCCTGGCCA CAGGCGGGCAGGACCCGGATGTGGAGCGGTTACTGGAAGGTTTCGCGTTTCTCACTGGGCGCTTGCGTCAGAAGCTCGATGACGAGTTGCCGGAGCTGAC CCATTCGCTGATGCAATTGCTGTGGCCCAACTACATGCGGCCGTTGCCCTCGTTCAGCATCCTGCAGTTCGACCCGCTCAAACGTGCGGGGCCGGCTATC CGGGTGGAGCGCGATACCGCAGTGGAAAGCGTGGCGATCAATGGCGAGCGTTGCCGTTTTCGCACCTGCTATCTCACCCAGGTGATGCCGTTGCAACTCA ATCGTGTGGACTACGTATTCCAGGGTGAGCGCGCTTTGCTGGATCTGCACCTGGACATGAGTGCGCCTGGCAATTTCACCGAATTGGTGTTCGAGCCTCT GCGCTTGCACCTGGCAGGCGATCGTTATGTCAGCCAGGGTCTTTATTTGAGCCTGCTACGTCATCTTGAAGGCATTGAGCTGTTGCTGCTGGACGAAAAT GGACGCTCCGTTGACGGTCCTGATGGACAGCCGACGTCGCTGCGGCTGGCTGCCAGCCAGGTACAGCCGGTCGGGTTCGGCGAAGACCAGGCATTGATCC CTTATCCGCCCAATACCTTCAGTGGCTATCGCCATCTGCAGGAGTACTTTGCCTTTCCCGACAAGTACTTGTTCGTCGATGTCGCTGGCCTCGACGCCCT GCACGGGGTTCCCCACGCGCAGCTCAAACAGGTGCGCGGCATGGTGATGCGCTTCGAACTGCGTATCCAGGCGCATGAACCCCAGTGGCCTGGGCTGGAT AACGTAAAGCTGTATTGCACGCCCATCGTCAACCTGTTCAACCATGACGCGGTGCCGATCCGCCTGGACGGCAAGCAGGATGAATACCTGCTCGTGCCTG GTGAATACACCCGGGGCCACGCAGGCGTCTTTTGCGTGGATCGCGTGACGGGTTGGCGCCCAGGCGGGCTTGGCCACCGGGCGTTTGTGCCGTTCGAGTC CTTCGAGCATGACGCCGATGCCGGGGCATCAACTGCGCCGCCCAGCTTCAGCATTCGTCAGCGCCCATCTGGGCAGCATGCCGGGCTCGACACCTGGATG GCATTCGGTAGCAGCCACAGAGGTGAGCAGGAAACACTCTCGATCGAGCTGACGTGCACCAACCAGAACCTTGCGCAGCAACTGGCCATTGGTGAGATCA ACCAACCTGGCGAGCACACTCCGGAATTCCTGACGTTTGGCAATATCACGGTGCCTACCGCGAGTTTCGCGCCGCCTCTGGACCAGGATTTCCTGTGGCG ACTGATCAGTAACCTGTCGCTCAACTATCTGTCGCTGACCGATATCAACGCTTTGAAAGTGATTCTCGAAACCTATGACCTGCCGCGTTACCACGGCCGG CAAGCGCAGCAGGTCAGCCTGAAGAGGCTCGGCGCACTGCAGGCCGTCAGCCACAAAGCGGTCGACCGCTTGCACCACGGCCTACCGCTTCGCGGGGTGC GGGTGGACCTTACGATCGATCCCCAAGGCTTCCTCGGGCAAGGCGACGTCTTTGTCTTTGCCTCCGTGCTCAACGAGTTTTTTGCCCTGTACGTCAATCT CAATTCGTACCACGAACTGCGCGTTATCAGCACACAAGGAGATGTGTACCTATGGCCACCCCGTTTGGGCCTGCAGCCCTTGCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGAACTGTCGCGGTGCGTTCGCGAATATTCGCTGTTCCAGGCGGTGCTTCTGGTGATCGAACGCCTGCGTGAGGCTCATCCGTTGCTGGACGAGGATGC GTTGTATGACCAACTGGAATTCCAGGCCAATCCCAGTCTTGGCTTTCCGGGGCATGACATAGACCAAGTGGAGTTTTTTGTGGAACAGGGTCAATTACGC GCGCGGTTGCGCCTCAATGTCCTGGGGCTGTTTGGCGCGGGTTCGCCGCTGCCGGCGTTCTATGGCGAGCAGGCGTGTGCAGAACCCATGGGGGTCAACG TCACACGAGACTTCCTGAACGTCTTTCACCATCGCCTGCAACGGCTGATGTTGCCGATCTGGCGCAAGTACCGCTATCGAGCGCGCTTTCGAAACGGGGC CAGCGATGGTTTTTCGGCACAGATGTTCGCCCTGATCGGCCTGGGAAGCCGGGAAGTTCGCTCAGCGGCACGTCTGGATTGCCGACGCCTGCTGCCTTAC
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| Amino Acid Sequence |
>type VI secretion protein TssF2
MTFNRYYQSELSALRQLGRRFSERNPALAPFLATGGQDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMQLLWPNYMRPLPSFSILQFDPLKRAGPAI RVERDTAVESVAINGERCRFRTCYLTQVMPLQLNRVDYVFQGERALLDLHLDMSAPGNFTELVFEPLRLHLAGDRYVSQGLYLSLLRHLEGIELLLLDEN GRSVDGPDGQPTSLRLAASQVQPVGFGEDQALIPYPPNTFSGYRHLQEYFAFPDKYLFVDVAGLDALHGVPHAQLKQVRGMVMRFELRIQAHEPQWPGLD NVKLYCTPIVNLFNHDAVPIRLDGKQDEYLLVPGEYTRGHAGVFCVDRVTGWRPGGLGHRAFVPFESFEHDADAGASTAPPSFSIRQRPSGQHAGLDTWM AFGSSHRGEQETLSIELTCTNQNLAQQLAIGEINQPGEHTPEFLTFGNITVPTASFAPPLDQDFLWRLISNLSLNYLSLTDINALKVILETYDLPRYHGR QAQQVSLKRLGALQAVSHKAVDRLHHGLPLRGVRVDLTIDPQGFLGQGDVFVFASVLNEFFALYVNLNSYHELRVISTQGDVYLWPPRLGLQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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