Pseudomonas poae RE_1-1-14, H045_06280
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas poae RE*1-1-14, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTTGTGGGGTCAGCACCACTTCGATTTCGCCGCTGAGCAGTTGCTTCTCGAACAGGGCGTTTTCACCCACGTAGGATGCGATCACTTTGCTGATCTGC TTTTCTTCCAGCAGCACGCCCAGACCGAAACCGTCAACACCGCAGTTGTTGGAGACCACGGTCAGGTCGCGGGTGCCCTTGCGCTTGATCTCATTGATGA GGTTTTCCGGAATGCCGCACAGGCCAAACCCCCCGGCGAGGACGGTCATGCCGTCTTCCAGGCCTGCCAGGGCTTCCTCGTAGGACGCCACGCGTTTATC GAAACCTGCCATACGCACCTCTTTTATTATGTGTGGGCCAGCCAATGAGCCGAGTGTTGCGCTGGCGGATTGATTTGTTAAGTTGTTTTTTAAGGTTGAT TGGTTTGAAAAACAGCATAATCGGCCTCAAGCCGCACGCTCAAAGCTGCGTTCGGCGGCGCTATCACTTGCAGCTTCCAACTTGCAGCCTGGAGCTTTCC
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| DNA Sequence for Gene |
>H045_06280
ATGACCGTCAAACAGATACGCGCATTCCTGGCCGTGGCCCAAAGCCTGAGTTTCGCCGCCGCGTGTGAGCGCCTGCACCTGTCCCAGTCGGCGCTCAGCC TCACTATCAAAGGGTTGGAGGAAGGCCTGGGGGGGCGTCTGTTCAGCCGCACCACGCGCAATGTGGCGCTCACCCCGGAGGGCGAATCACTCTTGCCACT GGCACGCCGATTGATCGCCGACTGGGACAATGCCGAAGACGAACTGCGTCAGCGTTTCACCTTGCAGCGCGGACGGGTGACGGTAGCGGCCATGCCATCG TTTGCCGGCAACCTGTTGCCGCCGATCCTGAAGATATTCCGCGCGCGTTACCCTCAAGTGAACGTAACCGTGCATGACCTGATAAATGAGCAGGTGCTGG AGATGGTCCGCGAGCGCCAGGTGGAGCTGGGCGTGGCGTTCGAGCCTGGCGAAGGTTCGGCGTTGTCATTTACGCCCCTGTATCTGGACCGTTTCGTTGC CGTGGTGCCGGGCGACTCACCCTTGGCGCGCCAAACATCCATCAACTGGCAAACCATGCTCGCACACCCGTTCATTACTTTGCAGCGACCCTCCACGGTG CGGGTGATGCTGGAAGAACATCTGGGTGCTTTGCAGATGAAGCTGCCGGTGGCACTGGAAAGCCATCAACTGGCGACGGTGGGCAAGATGGTCGCCAGTG GCTTGGGCGTGAGCGCCGTGCCTGCGTTATGCAGAGGGCAGATGGAGGAGGCGGGAGCGCGGTGCATCACCTTGACCGGCCCGGTGATCAAGCGGCCGAT CGGTGTGCTGACCAAACCGGGGCATGAGCTGTCGGCGGCGGCGCAAGTACTGTTTGATATTTTTCGGGACGAGGCGGGGAAGGGAAGGTTCCCAACGGTC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGACTGCACAATAACTTCAGGGAGCAGGCAAACCGGCGCCCTGAAGTTGCACTTAGTTAGTAGTAACGATCAATGACTTTAACTTGCGAGCTGTCTTTG AAAGAGCGCCAGGCATTGTTGATCGTGTCGAATACCTGTTCGATAAAGTTGCGATCGGCGGCGGCTTTCTTGCCGACATAACCCTGGCCGCGGCGGTACA TCTTCAGGCGCGCCGCCAGTTCACGGTGGTTGCGGTCGAACTCGGCTTCTTCGGAGTGAGGCGCCAGACGATCAATTTTCACTTCGCCCGACTTTTCCAC CCACAGGATATGGTCGTCGAGTGTGTCTTTTTGCGCGGCGAACATCTCAGCCAATTCATCGATAGTGGGTTGGTTGTTCAGATTCATGTGTAAGCCCCTT GACCAGTTGGTGATCTATCCGTTAATTCCGTTAAAACTGCTTAGTTGTCTCCGGCTCGAAAACCGGGCGTCAGTGACGGTCTGCCAAGTACGGGCAGGGT
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MTVKQIRAFLAVAQSLSFAAACERLHLSQSALSLTIKGLEEGLGGRLFSRTTRNVALTPEGESLLPLARRLIADWDNAEDELRQRFTLQRGRVTVAAMPS FAGNLLPPILKIFRARYPQVNVTVHDLINEQVLEMVRERQVELGVAFEPGEGSALSFTPLYLDRFVAVVPGDSPLARQTSINWQTMLAHPFITLQRPSTV RVMLEEHLGALQMKLPVALESHQLATVGKMVASGLGVSAVPALCRGQMEEAGARCITLTGPVIKRPIGVLTKPGHELSAAAQVLFDIFRDEAGKGRFPTV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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