Pseudomonas poae RE_1-1-14, H045_03275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas poae RE*1-1-14, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGACCCTTGTAGGAAAAACGCGTGGTGCCATCGGGCATCAGGCCCTTGCCCTGGGTGGAACGAATGGCCTGGCACAGGTTGGTCTTGCCCGACTTGCAGA ATTTGCACTGGCCGCATTCCGGGGTGTACAGCGGGATCACGTGATCGCCCACGGCCACCGAGGTCACGCCTTCGCCAATGGCTTCAACCACCGCACCGCC TTCATGGCCGAGGATCGACGGGAAGATGCCTTCCGGGTCCGCGCCCGACAGGGTGTAAGCGTCGGTGTGGCACACGCCGGAGGCGACCACCCGCAACAGC ACTTCGCCAGCCTTGGGCATGGCGACATCCACTTCAACGATCTCCAGGGGTTTGTTGGCTTCGAAGGCTACGGCGGCGCGGGATTTGATCATCCGGGTTT CTCCAAGGGATTTAAAACTAAGGCAGTGAGTGTAAATCATGGTTCTTTGATTAATAATCCGGACCAAAGCAAAACTTTATTGCTGCACAGGGATAATCAA
|
|
| DNA Sequence for Gene |
>H045_03275
ATGCTGGAGAACCGCTGGGAAGGTATCGACGAGTTCGTGGCGGTGGCCGAGTGCAGCCAGTTCACGGCGGCGGCCGAGCGGCTGGGCGTGTCCTCATCCC ATATAAGCAGGCAAGTGGCGCGCCTGGAAGAGCGCCTGCAAACGCGGTTGCTGTACCGCAGTACGCGCAAGGTGACCCTGACCGAAGCTGGCCAGACCTT CCTGCAGCATTGCCAGCGCCTGCAAGACGGTCGCGAGGAAGCTCTGCGCGCGGTCGGCGATCTGGCCAGCGAACCCAAGGGCATGCTGCGCATGACCTGC GCGGTGGCCTATGGCGAGCGGTTTATCGTGCCGCTGGTGACGCGCTTCATGGGCCTGTATCCGCAGTTGCGCGTGGATATCGAACTGAGCAACCGACAGC TGGACCTGGTGCATGAAGGCATGGACCTGGCGATCCGTCTCGGCCGCCTGCAGGACTCGCGCATGGTCGCCAGCCGCCTGGCACCGCGACGCATGTATGT ATGCGCATCACCGTCCTACCTCGCGCGGTATGGTCGGCCACACAGCTTGTCGGAATTGAGTCGGCATAACTGCCTGATCGGCAGTTCGGACATCTGGCAA CTGGCCCAGGACGGGCGCGAATTTTCCCAACGGGTTCAGGGAAACTGGCGCTGCAACAGTGGGCAGGCGGTGCTGGACGCAGCGTTGCAGGGGGTGGGGT TGTGTCAGTTGCCGGATTATTACGTGCTCGAGCACTTGTACAGCGGCGCGCTGGTGTCGCTGCTTGAGGCACATCAGCCACCCAATACGGCGGTGTGGGG GCTGTATCCGCAGCAGCGGCATTTGTCGCCCAAGGTGCGCAAGCTGGTGGATTTCTTGAAGGAGGGGCTGGCGGGGAGGCCGGAATACAGCCAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTCTGCGTTGACTGCACCGTCCTCATCGCAGGCAAGCCAGCTCCCACGCTTGATCGCAGTCATTGCAGGCACCTCGGTCAAATGTGGGAGCTGGCTTGCC TGCGATAAAGGCGACTCGGTTTAACTGCTATCTACGATTGGCCCATCGCAACCTGAGCCACTCCAGATCCTCTGGCCGAGTCACCTTGATATTGTCCGAG CGCCCCTCGATCAATCGCGGTGCCTGACCCGACCATTCCATCGCCGACGCTTCATCGGTAATCACCGCATCCGCCACCAGACTGTCAGCCAGGGCACGAT GCAAAGCGCCCAGGCGGAACATCTGCGGCGTGTACGCCTGCCAGATCAGGCTGCGATCGACGGTCTCCACCACCCGCCCCTGCTTGTCTGCGCGCTTGAG GGTATCGCGCGCGGGCACCGCCAGCAGGCCGCCCACCGGGTCATCCGCCAGCTCGGCCAGTAACGTATCGAGGTCGTCGCGGCTGAGGTTGGGCCTTGCC
|
|
| Amino Acid Sequence |
>LysR family transcriptional regulator
MLENRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRKVTLTEAGQTFLQHCQRLQDGREEALRAVGDLASEPKGMLRMTC AVAYGERFIVPLVTRFMGLYPQLRVDIELSNRQLDLVHEGMDLAIRLGRLQDSRMVASRLAPRRMYVCASPSYLARYGRPHSLSELSRHNCLIGSSDIWQ LAQDGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDYYVLEHLYSGALVSLLEAHQPPNTAVWGLYPQQRHLSPKVRKLVDFLKEGLAGRPEYSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|