Pseudomonas poae RE_1-1-14, H045_01195

Gene Feature Overview

Strain	Pseudomonas poae RE*1-1-14 GCF_000336465.1|latest
Locus Tag	H045_01195
Name
Replicon	chromosome
Genomic location	260625 - 261197 (- strand)

Cross-References

RefSeq	YP_007395811.1
GI	447915243
Entrez	14502043
INSDC	AGE24315.1
NCBI Locus Tag	H045_01195
UniParc	UPI0002AF483D
UniProtKB Acc	M4K0X2
UniProtKB ID	M4K0X2_9PSED
UniRef100	UniRef100_M4K0X2
UniRef50	UniRef50_Q87WU3
UniRef90	UniRef90_C3K8W5

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipopolysaccharide ABC transporter, permease protein LptC
Synonyms
Evidence for Translation
Charge (pH 7)	-1.29
Kyte-Doolittle Hydrophobicity Value	-0.388
Molecular Weight (kDa)	21424.0
Isoelectric Point (pI)	6.28

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 54 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004048 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: H045_01195 Search term: lipopolysaccharide ABC transporter, permease protein LptC

Human Homologs

References