Pseudomonas protegens CHA0, PFLCHA0_c60520 (clpV)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTACAGCGGCCACCTGGCGGCCCAGACCCGCTACCCGGACGGCTTGCGGGCGATCATCAGCGAGTATTTCGGCCTGCCGGTGCAGATCGAGGAATATGTC GGCCAGTGGCTGGAGTTGCCCGAACGCAGCCGGGTCGGGGTGCAATCCCATCAGCTGGGGGTGGATTTCTGCCTGGGCAGCCACGTCTGGGACCGCCAGC ACAAGTTCCGCATCCGCCTCGGCCCGATGAAACTGGACGACTACCTGGGGATGCTGCCCGACGGCCAGCAATTCCAGGAACTGGTGGCCTGGGCCGCCGA ATACCTGGGCTTCGAGCTGGACTGGGACCTGAACCTGGTCCTGCTCAAGGACGAAGTGCCCAAGCTGCAACTCAACGGCCGCCAGCGCCTGGGTTTCAAC ACCTGGCTCGGCCAACCCGGCAGCGATGCCAAGGATCTAATACTGGCCCGGCACTACGCCGACCTGGCCACTACCTCACGTACACCAAGGAGCACAGAGC
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| DNA Sequence for Gene |
>PFLCHA0_c60520
|clpV
ATGGGTGAAATCAGTCGCGCGGCGCTGTTCGGCAAACTCAACAGCGTTGCCTACAAAGCCATCGAAGCCGCCACGGTCTTCTGCAAATTGCGGGGCAACC CCTATGTGGAACTGGCCCACTGGTTTCACCAGTTGCTGCAACTTACGGACTCGGACCTGCACCGCATCATCCGCCAGTTCAACCTGGAGCCGGCGCGCCT GGCCAAGGACCTGACCGAGGCCCTGGACCGCCTGCCCCGGGGCTCGACCTCGATCACCGACCTGTCGTCCCACGTCGAGGAGGCGGTGGAGCGCGGTTGG GTCTACGGCAGCCTGATGTTCGGCGAAAGCCAGGTGCGCACCGGCTACCTGGTGATCGGCATCCTCAAGACCCCGAGCCTGCGCCATGCGTTGCTGGGGC TGTCCCGCGAGTTCGACAAGATCAAGGTCGAGACCCTGTGCGAGCGCTTTGACGAATACATCGGCGACTCGCCGGAAAACGCCCTGAGCGCCAGCGACGG CTTCAGTGCCGGTGCGGTGCCCGGCGAAGCCAGCGGCGCCATGGCCCCCAGCGCCCTGGGCAAGCAGGAAGCCCTCAAGCGCTTCACCGTCGACCTCACC GAACAGGCCCGCAGCGGCAAGCTCGACCCCATTGTCGGCCGTGACGAAGAGATCCGCCAACTGGTGGACATCCTCATGCGCCGCCGGCAGAACAACCCGA TCCTCACCGGTGAAGCCGGGGTGGGCAAGACCGCGGTGGTGGAAGGTTTCGCCCTGCGCATCGTCGTCGGCGACGTGCCGCCGGCGCTCAAGGACGTTGA ACTGCGCAGCCTCGACGTCGGCCTGCTGCAGGCCGGCGCCAGCATGAAGGGCGAGTTCGAACAGCGCCTGCGCCAGGTCATCGAGGACGTCCAGGCCTCG CCCAAGCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGGTGGGCGCCGGTGGCGCCGCCGGCACCGGCGACGCGGCCAACCTGCTCAAGCCGGCTC TGGCCCGTGGCACCCTGCGCACCGTGGCCGCCACCACCTGGGCCGAGTACAAGAAGCACATCGAGAAAGACCCGGCCCTGACCCGGCGCTTCCAGGTGGT GCAAGTAGCCGAACCTTCGGAAGACAAGGCGCTGCTGATGATGCGCGGCGTGGCCTCGACCATGGAACAGCACCATCAGGTGCAGATCCTCGACGAAGCC CTGGAGGCCTCGGTCAAACTGTCCCATCGCTACATTCCCGCGCGCCAGTTGCCGGATAAATCCGTCAGCCTGCTGGATACCGCTTGCGCCCGCGTCGCCA TCAGCCTGCACGCCGTGCCGGCCGAGGTGGACGATAGCCGCCGGCGCATCGAGGCCCTGGAAACCGAGCTGCAGATCATCGCCCGGGAACAGGCGATCGG CGTTGCCATTGGCAACCGCCAGGTCAACAGCGAGAACCTCCTGACTGCCGAGCGCGAGCGCCTGGCCGAGCTGGAAAGTCGCTGGGCACAAGAGAAGACC CTGGTGGACGAACTGCTGGCAACCCGCGCCCAATTGCGGGAAAACGTCGGCCTGGTGGACAGCGACGTCGGCGACGACAGCCACGGCCTGCGGGAAAAAC TGGTGGACCTGCAACAGCGCCTCAGCACCCTGCAAGGCGAGACCCCGCTGATCCTGCCGACCGTGGACTACCAGGCCGTGGCCTCGGTGGTCGCCGACTG GACCGGCATTCCAGTGGGGCGCATGGCCCGCAACGAGCTGGAAACCGTGCTCAACCTGGACCAGCACCTGAAGAAACGCATCATCGGCCAGGACCACGCC CTGCAGATGATCGCCAAGCGCATCCAGACCTCCCGCGCAGGCCTCGACAACCCGAACAAGCCGATTGGCGTGTTCATGCTGGCCGGCACTTCCGGGGTGG GCAAGACCGAAACCGCCCTGGCCCTGGCCGAAGCCATGTATGGCGGTGAGCAGAACGTCATCACCATCAACATGAGCGAGTTCCAGGAAGCCCACACCGT GTCCACCCTCAAGGGCGCCCCGCCGGGCTATGTCGGCTACGGCGAAGGTGGCGTGCTCACCGAAGCGGTACGGCGCAAGCCCTACAGCGTGGTGCTGCTG GACGAAGTGGAAAAGGCCCACCCGGACGTGCACGAGATCTTCTTCCAGGTATTCGACAAGGGCGTCATGGAAGACGGCGAAGGCCGCATGATCGACTTCA AGAACACCCTGATCCTGCTCACCACCAACGCCGGCACCGAGCTGATCGCCAACGTCTGCAAGAACCCGCAGGCGGTGCCCGAGCCGGAGGAAATCGCCAA GGCCCTGCGCCAGCCACTGCTGGAGATCTTCCCGCCGGCACTGCTGGGGCGCCTGGTGACCATTCCCTACTACCCGCTGAGCGACGAGATGCTCAAGGCC ATCACCCGCCTGCAACTGGGGCGGATCAAGAAGCGCGTGGAAAGCACCCACAAGGTGGATTTCGATTTCGACGACGAGGTCATCGACCTGATCGTCTCGC GCTGCACCGAGACCGAAAGCGGCGGGCGGATGATCGACGCCATCCTGACCAACAGCCTGCTGCCGGACATGAGCCGCGAGTTCCTCAACCGCATGCTCGA AGGCCGCGCCCTGGCCGGGGTGCGCATCAGCCAGCGCGACAACGAACTGCACTACGACTTCAGCGAGCCGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCCACGCCCTGCGCAGGAGCCGGCTTGCCAGCGAAGCGACCGCCACGGTGATGGACCTGGCGCCTTCGCGAGCACGCTCGCTCCTGCAGGGGGCTGACC TGGCACACCACGCATTCAACGAGACTGACGATGTTATTTCAGCAATCCACACGACTGGCACAGGTCAACTGCCCCCTGGGACCGGACGTCCTGCTGCTCA AGAGCCTGGGCGGCGGCGAGGAGCTGGGGCGGCTGTTCGACTACCAGCTGCAACTGGCCTCCAGTGACGCCAACATCGACCTCAACCAGTTGCTGGGCAA GCCCATGGGCCTCAGCGTACAGCTGGACGGCGGCGGCCAGCGGTACTTCCACGGCATCGTCGCGCGCTGCAGCCAGAACATCGACACCGGCCAGTTCGCC AGCTACGAGGTGACGCTGCGCCCCTGGCTGTGGCTGCTGAGTCGCACCTCCGACTGCCGGATTTTCCAGAACCTGAGCATCCCGCAGATCATCAAGCAGG
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| Amino Acid Sequence |
>protein ClpV
MGEISRAALFGKLNSVAYKAIEAATVFCKLRGNPYVELAHWFHQLLQLTDSDLHRIIRQFNLEPARLAKDLTEALDRLPRGSTSITDLSSHVEEAVERGW VYGSLMFGESQVRTGYLVIGILKTPSLRHALLGLSREFDKIKVETLCERFDEYIGDSPENALSASDGFSAGAVPGEASGAMAPSALGKQEALKRFTVDLT EQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGFALRIVVGDVPPALKDVELRSLDVGLLQAGASMKGEFEQRLRQVIEDVQAS PKPIILFIDEAHTLVGAGGAAGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVAEPSEDKALLMMRGVASTMEQHHQVQILDEA LEASVKLSHRYIPARQLPDKSVSLLDTACARVAISLHAVPAEVDDSRRRIEALETELQIIAREQAIGVAIGNRQVNSENLLTAERERLAELESRWAQEKT LVDELLATRAQLRENVGLVDSDVGDDSHGLREKLVDLQQRLSTLQGETPLILPTVDYQAVASVVADWTGIPVGRMARNELETVLNLDQHLKKRIIGQDHA LQMIAKRIQTSRAGLDNPNKPIGVFMLAGTSGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRKPYSVVLL DEVEKAHPDVHEIFFQVFDKGVMEDGEGRMIDFKNTLILLTTNAGTELIANVCKNPQAVPEPEEIAKALRQPLLEIFPPALLGRLVTIPYYPLSDEMLKA ITRLQLGRIKKRVESTHKVDFDFDDEVIDLIVSRCTETESGGRMIDAILTNSLLPDMSREFLNRMLEGRALAGVRISQRDNELHYDFSEPA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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