Pseudomonas protegens CHA0, PFLCHA0_c60240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGACCGGGGTCATCCGCATCACCCGCATGCGTGCGTAGCCCGTCCATTACAAGGAGTCATTCATGACCAAGACTGTTATCACCAGCGACAAGGCACCT GCTGCCATCGGCACCTACTCCCAGGCGATCAAGGCTGGCAACACCGTCTACATGTCCGGCCAGATCCCTCTGGACCCCAAGACCATGGAGCTGGTGGAAG GCTTCGAAGCCCAGACCGTCCAGGTGTTCGAAAACCTCAAGTCGGTAGCCGAGGCCGCTGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCT CACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATGGGCAAGTATTTCCAACAGCCTTACCCAGCCCGCGCCGCCATTGGCGTGGCCGCCCTGCCA AAGGGTGCACAGGTTGAAATGGATGCCATTCTGGTCATCGAGTAACACCCGCGGCGCAGCCCTCAAGGCTGCGCCGTTTTCGTTCTGAAAGGATTTCGTC
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| DNA Sequence for Gene |
>PFLCHA0_c60240
ATGCGCCAAGCGCTAGCTGTTTCGCTGCTCGCCGTACTGCTCGGCGGTTGTGCCAGCGACCCCGCCAAAAACGATGTGGGCGGCATCTGGATCAATCAGG TAGCGATCGACGCAGCCTCCAAGGGCGGCCCTTTGCGTGAAGCCCTCCAGGCCTACGGCCCGAACCTGGAATGGGAGCTCAATACCAAGGCTGGCCAGGC CCGCTACACCAACGGTTTCGAAACCGTCGAAGGCAAGATCATCGGCGACGGTTCCAGCACTGCAAAAGTCGAGTTCTATGGCAGCGCCGCCACCGACTTG AAGCGCAACGGCAAGCAACTGCTGCAAGTGGCCAACGACAATGAGCCCGAGCAGGTCTTCGACCGCCCCAAAGACCCCGCCCCCGAAGGCGCGCCGCTAG GCGCCAACTTCGAGCGCGCCTTGTACTCGGCGTATCTGGGTGGCAAGTGGAAGATCGTCAACGGACCGGGCCTGGGCAACGAGGTGCAGTTCCAGGCAAA CGGCGCCGTCCAGGGCCTGCCGGGCGCCGATCGCTACGCCTTGTGCCTGGCTGGCGACTGCGCCTCGATGAGCGGCGGCAACGATAGCATCTGGCTGCAG CTCAACGGCCAGGGCAACTCCTGGATCTTCGTGCGCAAGGATCAACAGCTGGAGATCTTCCAGGCGGTGAATACCGCCCTGGCGGATGAAGTGCCCTCGC TGACGCCGGGCAGCCAGCAGTGGTTGCTGGAAAAGCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTACCCTGTAGCCGCTGCCGCAGGCTGCGACAAGGTCCACAGGACCTTCGGCCTGTCGGCAGCGACGCCCTCGGGAAGCCGGTCGCAGCCTTCGACCGCG ACCCCAAGCTGCTCGGGCAGCTTAGCCCTGCGTCGTCAGAATCGCTGCATAACCTTCGCGATAACTCGGATAGCGCGGCACCCAGCCCAGCGCCCTGGCC CGGGCATTGCTGCAACGCTTGCTGCCGGTACGACGCACGCTGGCATCGTCCGCCCATTCGGTGACGCCCAGGTAATCGCGCAGCCAGTCGACGACCTCTG CCAGGGGCGCGGGCGCATCGTCCACGCCGATATAGCAATCATCCAGCGCCGTGCCACTGCGGTCCGCCTTGATCAGGAACGCCAGCAGGCCCGCGGCATC GTCCGCGTGAATACGGTTGCCGTACAACGGCGGCTCGATCGCCACGCGATAACCCCGGCGCACCTGGGTCAGCAGCCACTCGCGACCCGGGCCATAGATG
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| Amino Acid Sequence |
>putative lipoprotein
MRQALAVSLLAVLLGGCASDPAKNDVGGIWINQVAIDAASKGGPLREALQAYGPNLEWELNTKAGQARYTNGFETVEGKIIGDGSSTAKVEFYGSAATDL KRNGKQLLQVANDNEPEQVFDRPKDPAPEGAPLGANFERALYSAYLGGKWKIVNGPGLGNEVQFQANGAVQGLPGADRYALCLAGDCASMSGGNDSIWLQ LNGQGNSWIFVRKDQQLEIFQAVNTALADEVPSLTPGSQQWLLEKQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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