Pseudomonas aeruginosa AZPAE14996, NT11_RS21810 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14996 AZPAE14996_contig_26, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACGCAGGACGAAGATCACGTACTTGATGGAAACGACCCAGACCAGCGACCAGAAGATCAGCGACAGCACGCCAAGGACGCCATCGTGGTTGGCCTGCA CCCCGTAGCCGCCGATGAAGACCTCTTTCAGGGTATACAAGGGACTGGTGCCGATATCCCCATAGCAGACTCCAACCGCCCCGACCATCAGGCCGATGGC AGAGCTGGAATGCCCCTCCGACGTCTCCTCGGCACGCGTCGCTGCATCACTCATGAAACGCTTTCCCCCGGAAAAATTCGGCAAATGCTGCGCCCATGCC GTCCGCGATGCAAGCGCCGAGGCCACGGACTGCTATGACTATAGAAGGCCGGGGAGCCGATTGCCGAGCGCCCGCGGTGAGTTTTTCCAGGGCCGGAAAA GAGCTGCACGGGAGACTGGAAAAGCCGCGGCGCTGCCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCAGCAAGCGCGCCCGCCTACCGAGGTTAGCC
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| DNA Sequence for Gene |
>NT11_RS21810
|rimO
ATGTCCACCCCCACTCCCAAAGTCGGCTTCGTCAGTCTTGGATGCCCCAAGGCGCTGGTCGACTCCGAGCGCATCCTCACCCAGCTGCGCATGGAAGGCT ATGAGGTCGTTCCGACCTACGAAGACGCCGACGTCGTGGTGGTCAACACCTGCGGTTTCATCGACAGCGCCAAGGCCGAGTCCCTGGAAGTGATCGGCGA AGCCATCGCCGAGAACGGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGAAGAGCACGCGATCCGCGACGTGCATCCCAGCGTCCTGGCGGTCACCGGC CCGCAACAGTACGAGCAGGTGGTTACCGCGGTGCACGAAGTGGTGCCGCCGAAGACCGAACACAACCCGCTGGTCGACCTGGTCCCGCCGCAAGGCGTCA AGCTGACCCCACGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCCATGCGCGGCAAGCTGGTCAG CCGGCCGGTCGGCGACGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTCAAGGAACTCCTGGTGATTTCCCAGGACACCAGCGCCTACGGCGTG GACCTGAAGTACAAGACCGACTTCTGGAACGGCCAGCCGGTCAAGACCCGCATGAAGGAACTCTGCGAGGCGCTGAGCAGCATGGGCGTGTGGGTTCGCC TGCACTACGTCTACCCGTACCCCAACGTCGACGACGTGATCCCGCTGATGGCCGCCGGCAAGCTCCTGCCGTACCTCGACATCCCCTTCCAGCACGCCAG CCCGAAGGTGCTCAAGGCCATGAAGCGCCCGGCCTTCGAGGACAAGACCCTGGCCCGGATCAAGCAGTGGCGCGAGATCTGCCCGGAACTGACCATCCGC TCGACCTTCATCGTCGGCTTCCCGGGCGAAACCGAAGAAGACTTCCAGTACCTGCTCGACTGGCTGACGGAAGCCCAGCTCGACCGCGTCGGCTGCTTCC AGTACTCCCCCGTCGAAGGCGCTCCGGCCAACGAGCTGGGCCTGGAGCCGGTGCCGGACGAGGTCAAGCAGGACCGCTGGGAACGCTTCATGGCCCACCA GCAGGCGATTTCCGCCGCTCGCCTGCAGCTCAAGGTGGGCAAGGAAATCGAAGTGCTGATCGACGAAGTCGACGAACAGGGCGCGGTCGGCCGCTCCTGG GCCGACGCTCCGGAAATCGACGGCAACGTGTTCGTCGACAGCGACGAGCTGAAGCCGGGCGACAAGGTCCGCGTGCGCATCACCGATGCCGACGAGTACG ACCTCTGGGCCGAGCTGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCCCCTGAAGAGCCCCGCCCCGCGGGGCTTTTTCATCGCCAACCGTTCCGGAGAGCACGATGCTCAACAACGACGTACTACGCAGCCTGCGCTACCTG CTGGATCTTCCCGACGCACATCTGGCCGAACTGGCCGCCCCGTTCGGCGAGCAAGTCGAAGCGGACCTGCTCGAGGCTTACCTGAAGAAGGAAGACGAAG ACGGCTTCCAGGCCTGCCCCGACCGCTACCTGGCGCGCTGCCTGGACGGACTGATCATCCAGCGCCGCGGTCGCGACGAGTCGCGTCCGCTACCGCCGCT GGAGCTGCCGTTGAGCAACAACATGATCCTGAAGAAGCTGCGGGTCGCCTTCGAACTCAAGGAGGAAGACCTCCATGCCATCCTCGACAGCGTCGACTTC CCGGTCTCCAAACCCGAGCTGAGCGCCCTGTTTCGCAAGCCCGGCCACAGCAACTACCGGACCTGCGGCGACCAGTTGCTGCGCAACTTCCTCAAGGGCC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTPTPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIAENGKVIVTGCMGVEEHAIRDVHPSVLAVTG PQQYEQVVTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGV DLKYKTDFWNGQPVKTRMKELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKQWREICPELTIR STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVPDEVKQDRWERFMAHQQAISAARLQLKVGKEIEVLIDEVDEQGAVGRSW ADAPEIDGNVFVDSDELKPGDKVRVRITDADEYDLWAELV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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