Pseudomonas protegens CHA0, PFLCHA0_c54360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AATGCCCTGGCCACCCTGGCTGCGGCACGCCATGTGGGCGTGGTGCCGTCGATGGGCATTGCCGGCCTGAGCGCGTTCAAGAGCGTGAAGCGGCGCATGG AGAAAGTCGCCGAAGTGCATGGCGTGACCATCTACGATGATTTCGCCCATCACCCGACGGCCATCGCCACTACGCTGGATGGCTTGCGCAAGCGGGTTGG CGATGCCCCGGTGATCGCCATCATCGAGCCGCGCTCCAACTCCATGAAGCTCGGCGCGCACCGTGATGGCCTGCCGGAAAGCGTCAACCAGGCCGATCAG GTGATCTGGTATGCCCCGGCCAACCTGGGCTGGGATCTGGCCGCCACGGCGGCCTTGTGCACGGTGCCGTCGATTGTCAGCGACTCTCTGGAAGGCATCA TCGAGCGGGTGAAGAGCCAGGCCAAGCCGGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTTGGCGGCCTGCACGGCAAACTGGCCGAGGCGCTGCG
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| DNA Sequence for Gene |
>PFLCHA0_c54360
ATGAACAACGGCCCGGAACGCATCACCCTGGCCATGACCGGTGCCTCGGGCGCCCAGTACGGCCTGCGCCTGCTGGACTGCCTGGTGCGTGAGGACCGGG AGGTGCATTTTCTGATCTCCAAGGCTGCGCAGTTGGTCATGGCCACGGAAACCGATGTGACCCTGCCGCCCAAGCCGCAGACCATGCAGGCCTTCCTCAC CGAATACACCGGTGCGTCGGCGGGGCAGATCCGCGTTTATGGCAAGGAGGACTGGATGTCGCCGGTGGCCTCGGGCTCCGGCTCGCCGGCGGCGATGGTA GTGGTGCCGTGCTCCACCGGTACCTTGTCGGCGATTGCCACCGGTGCCTGCAACAACCTGATCGAGCGCGCCGCGGACGTGACCCTCAAGGAGCGCCGGC AGTTGATTCTGGTGCCTCGCGAGGCGCCGTACTCCAGCATTCACCTGGAGCACATGCTCAAGTTGTCGAACATGGGCGTGACCATTCTGCCGGCCTCGCC GGGCTTCTATCACCAGCCGCAGACCATCGATGACCTGGTGGATTTTGTCGTCGCGCGGATTCTCAATCTGTTGAACATCCCGCAGGACATGTTGCCGCGC TGGGGCGAGCATCATCTGAGCAGCGATGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCCTGCTGGTGCTGTTGGCCGCCCTGCAACTGGGCGGCTGTGCCACGGCCCGGACCTTGAATGCCGCCCAGCCCGGGGCGCCGGTGGTGTATTCGGGG ACGCGCCTGGACTTGTATGCGATGCAGGGTGGGTGCTGCGCCATGGACCGCTTTGGCGCTGAGGCACCGAGCTATCCTGGCGTGGATCTGCCAGCCAGTG CCCTGCTCGATACCCTGTTGCTGCCGCTGTCGGTGCTGACGGTATTGGGGGTGGGGTTTCAGGCAACGGGCGGGTTGTAGTGCTTCGCCGGCAAGCCGGC TCCTACAGGTACGTGCAGGAGCGGCTTGCGGGCGAGCGATTCATTTGCCCAGCTTGCGTAGTTCGTCGGACTCGACGATCCGCGTGCCGGTCTGCTCTTC CAGGGCCAGGCGCCACATGGCCCGGGCCAGTTGGCAGGCTTCGATCCCGCGGTACTTGCCCGGTATCAGCCGCGACAGTGGTCCGGCCAGCTGTTCGCCC
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| Amino Acid Sequence |
>putative aromatic acid decarboxylase
MNNGPERITLAMTGASGAQYGLRLLDCLVREDREVHFLISKAAQLVMATETDVTLPPKPQTMQAFLTEYTGASAGQIRVYGKEDWMSPVASGSGSPAAMV VVPCSTGTLSAIATGACNNLIERAADVTLKERRQLILVPREAPYSSIHLEHMLKLSNMGVTILPASPGFYHQPQTIDDLVDFVVARILNLLNIPQDMLPR WGEHHLSSDE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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