Strain | Pseudomonas aeruginosa strain AZPAE14996 AZPAE14996_contig_12, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AAGACCACCACCAGCCAGGCCGGGAACAGGATCACCCGCCAGTCGCGTGCCTGTTCGTAGCGCATCTGGCCGGCGACGAAGAAGCTGTGGTGGTCGCCGG TATGGCGCTTGTAGAACATCCGCCCCAGCGGGTGCTTGTGGTGGCCGAGGGACTTGTGGATGCGGTACTCGCCCCAGTTGAAGAACACCAGCGCGGCCGG CACCGTCAGCCATTCCAGCAGGCTCGGCTGCTCGAGCCGGGAGAGGAAGAAGACGATCCAGGCGCCGCCGTAGGCGAGGACGAAGCCGGCGTGCAGCCAG GGGTTGTAGCCGGGCCGGATGGCCGCGCGGTACTGCTGGCGAAAGGGTTGGGGATCGAAGGACATGGTCGGCATCTCGCGTGTGATTGTTATTGGCTGGG CCGCGAACCGGGCCGATCCGCCGGGGCGGAAGGGCTTGCATTCGAGTGTAGCGATGCCAGCCTTATCAGGGTAAATGGATAAATAGAATGAGGATTATTC
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DNA Sequence for Gene |
>NT11_RS10085
ATGAAGCTGAACTTGCAGCAGCTCGACCTCAACCTGCTTCTGGTCTTCGATGCCCTGATGCGCGAACGCAACCTGTCGCGCGCGGCGATCCGCCTGCATC GCAGCCAGCCGGCGGTGAGCAACGCCCTCGCCCGCCTGCGCGAACAGCTCGACCAGCCGCTGTTCCGGCGCACCGCCAAGGGCCTGGAACCCACCGCCGC CGCCCTCGCCCTGTACGTGCCGGTGCGCCAGGCCCTGCATCTGCTGCAGGCCGGCCTTGGCTCCCAGGAAACCTTCGATCCGCACACTGCGCGGACCTTT CGCCTGACGATGAACGACTATGCCCAGTTGCGCCTGCTGCCGGGCCTGGTGACCCGCCTGAAGACCCTGGCCCCGCGGGTGACGCTGGAGGTACGTCCCG ACGAAGGCGCCTCGATCCCGGCGCAACTGGCCAGCGGCGAACTCGACCTGGCGATCGACTACCTGTACTTCGACGAGCCCGAGCTGGCCTACCGGCCGGT CGGCGAGGAACGCCTGGTGGTGATCGCCCGGCAGGGCCATCCGGCCTTCCGCGGCGGCCTCGACCGCGCGGCCTACGAGGCCGCGCAGCACGTCTCGATC CTGCCGCGGGTCGGACGCGGCAGTCCGCTGGAGATCGTCCTCGGCTCGGCCAGGGTACAGCGCCAGGTGCAATTGCTGGTGCCTCACTACCTGACCATCC CGGCCATCGTCGCCAGCACCGAGCTGCTCGGCACCGTGCCACGCCGCCTGGCCGAGCGCTTCGCCAGCAGCCATGGTTTGCAACTGGCGGACGTCCCCTT CGAGATGGCCCCGGTGCAGGTCAACCTGATCTGGCATCGCCAGCAGGAAGCGACGCCCGGCCTGCAATGGCTGCGCGAGCAGATCATGCAGATCGAACAG GGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GTCATAGGTTGCGCGCGAGGATCAGTCTTCCGTCACTTTCGATCATTGAGCGAGGCCTTTCCCGCAACCTATGGTGAGGCTCCGCCCCGCAACCGGCCCC AGGCCGCCCCGGGGATACAGTCCAGCACCCGCCAGAGGAGCCACCGTATGACCAGCCTGCCGCTCGAAGCCAACGCCGCCGCCACCCTCGCCGAATGGCA CGGGCTGATCGCCCGCCGCGACCTCTCCGGGTTGCCGCGCCTGCTGCACCCCGATGCCGTGTTCCGCTCGCCGATGGCGCACAAGCCGTATGCCGGCGCA CCGGTGGTCTCGATGATCCTGAATACCGTGCTCACGGTCTTCGAGGATTTCGCCTATCACCGCCAGTTGGCCAGCGCCGACGGCCGCAGCGTGGTGCTGG AATTCAGCGCACGGGTCGGCGAACGCGAACTGAAAGGCATCGACATGATCCGCTTCGACGACGACGGCCGGATCGTCGACTTCGAAGTGATGGTCCGTCC
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Amino Acid Sequence |
>LysR family transcriptional regulator
MKLNLQQLDLNLLLVFDALMRERNLSRAAIRLHRSQPAVSNALARLREQLDQPLFRRTAKGLEPTAAALALYVPVRQALHLLQAGLGSQETFDPHTARTF RLTMNDYAQLRLLPGLVTRLKTLAPRVTLEVRPDEGASIPAQLASGELDLAIDYLYFDEPELAYRPVGEERLVVIARQGHPAFRGGLDRAAYEAAQHVSI LPRVGRGSPLEIVLGSARVQRQVQLLVPHYLTIPAIVASTELLGTVPRRLAERFASSHGLQLADVPFEMAPVQVNLIWHRQQEATPGLQWLREQIMQIEQ G
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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