Pseudomonas protegens CHA0, PFLCHA0_c47680 (sbcB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000175 3'-5'-exoribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11046
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004529 exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000977
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 29 221 4.8E-65
SMART SM00479 exoiiiendus IPR013520 Exonuclease, RNase T/DNA polymerase III 31 223 0.0047
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 32 497 2.48E-123
Gene3D G3DSA:3.30.1520.20 Exonuclease ExoI, domain 2 IPR038649 Exonuclease I, SH3-like domain superfamily 234 372 3.2E-46
Pfam PF00929 Exonuclease IPR013520 Exonuclease, RNase T/DNA polymerase III 34 213 1.8E-23
FunFam G3DSA:3.30.1520.20:FF:000001 Exodeoxyribonuclease I - - 234 372 1.2E-52
Gene3D G3DSA:1.20.1280.70 Exonuclease ExoI, domain 3 - - 378 439 1.1E-25
CDD cd06138 ExoI_N - - 33 215 1.25577E-108
Pfam PF08411 Exonuclease C-terminal IPR013620 Exodeoxyribonuclease I, C-terminal 232 495 1.7E-96
PANTHER PTHR11046 OLIGORIBONUCLEASE, MITOCHONDRIAL IPR022894 Oligoribonuclease 24 451 7.4E-11
FunFam G3DSA:1.20.1280.70:FF:000001 Exodeoxyribonuclease I - - 379 439 3.7E-26
FunFam G3DSA:3.30.420.10:FF:000033 Exodeoxyribonuclease I - - 30 221 1.8E-91
PIRSF PIRSF000977 Exodeoxyribonuclease_I IPR023607 Exodeoxyribonuclease I 24 502 0.0
Gene3D G3DSA:1.10.287.1240 - - - 440 498 4.3E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.